Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18301 | 3' | -57.7 | NC_004681.1 | + | 3153 | 0.71 | 0.425973 |
Target: 5'- uGCgcagGACugccaccagGCCCUUgGCGCcgcgGGUGCGGGc -3' miRNA: 3'- uCGa---CUG---------UGGGAAgCGCG----CCAUGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 5924 | 0.68 | 0.552811 |
Target: 5'- gGGCUGAgGCgCUucUCGUGCcgcaguaccaGGUugGGGc -3' miRNA: 3'- -UCGACUgUGgGA--AGCGCG----------CCAugCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 6682 | 0.67 | 0.625801 |
Target: 5'- cGGCccaUGGCGCCCUUgacggCGCGCaGGUGCuucGGu -3' miRNA: 3'- -UCG---ACUGUGGGAA-----GCGCG-CCAUGc--CC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 7455 | 0.66 | 0.709285 |
Target: 5'- gGGCuUGGCGggaggCUUCGcCGCGGcgGCGGGg -3' miRNA: 3'- -UCG-ACUGUgg---GAAGC-GCGCCa-UGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 8496 | 0.67 | 0.636312 |
Target: 5'- gAGCUGAUggGCgCCUUCGCGgaCGGUgagaccgcccccGCGGc -3' miRNA: 3'- -UCGACUG--UG-GGAAGCGC--GCCA------------UGCCc -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 12856 | 0.7 | 0.463285 |
Target: 5'- gAGgUGGCAUCgCUgaucUCGCugGCGGUAUGGGu -3' miRNA: 3'- -UCgACUGUGG-GA----AGCG--CGCCAUGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 13127 | 0.71 | 0.390508 |
Target: 5'- cGCUGcccgccacCGCCCUUCGUggcacgGCgGGUACGGGc -3' miRNA: 3'- uCGACu-------GUGGGAAGCG------CG-CCAUGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 17295 | 0.7 | 0.463285 |
Target: 5'- ---cGACGCCCUgcuggCGCGCGuGcccGCGGGa -3' miRNA: 3'- ucgaCUGUGGGAa----GCGCGC-Ca--UGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 17377 | 0.67 | 0.625801 |
Target: 5'- gGGCgucgucuccggGAUACCCgccgccCGCGUaguugaGGUACGGGa -3' miRNA: 3'- -UCGa----------CUGUGGGaa----GCGCG------CCAUGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 18912 | 0.66 | 0.688636 |
Target: 5'- aGGCUGACuucACCCUcgggaUGgGUGGUuauCGGGc -3' miRNA: 3'- -UCGACUG---UGGGAa----GCgCGCCAu--GCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 24917 | 0.73 | 0.325615 |
Target: 5'- cAGCUGcCACCCUUCuGCGCGGcguCGa- -3' miRNA: 3'- -UCGACuGUGGGAAG-CGCGCCau-GCcc -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 25241 | 0.7 | 0.47288 |
Target: 5'- cGGCcaUGGCGCCCgcggCG-GCGGUugGGu -3' miRNA: 3'- -UCG--ACUGUGGGaa--GCgCGCCAugCCc -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 33078 | 1.09 | 0.000922 |
Target: 5'- uAGCUGACACCCUUCGCGCGGUACGGGu -3' miRNA: 3'- -UCGACUGUGGGAAGCGCGCCAUGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 34068 | 0.68 | 0.573484 |
Target: 5'- cGgUGACAaCCUUgGcCGCGG-ACGGGa -3' miRNA: 3'- uCgACUGUgGGAAgC-GCGCCaUGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 37025 | 0.67 | 0.633158 |
Target: 5'- cGCUGACACuCCUUC-CGgccaucgccaggguCGGUgAUGGGg -3' miRNA: 3'- uCGACUGUG-GGAAGcGC--------------GCCA-UGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 39933 | 0.71 | 0.399193 |
Target: 5'- cGCgGGCGCggugCGCGCGGUGCGGu -3' miRNA: 3'- uCGaCUGUGggaaGCGCGCCAUGCCc -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 48871 | 0.66 | 0.719511 |
Target: 5'- uGCUGACggGCCUcUCGCGCcuGUcucacgucacGCGGGc -3' miRNA: 3'- uCGACUG--UGGGaAGCGCGc-CA----------UGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 50382 | 0.71 | 0.381948 |
Target: 5'- cGCgggGACgugGCCCUUCuuGCGGUgggcGCGGGa -3' miRNA: 3'- uCGa--CUG---UGGGAAGcgCGCCA----UGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 53615 | 0.7 | 0.463285 |
Target: 5'- gAGCuUGACGCCCgcgaugUCacCGCGGUcAUGGGu -3' miRNA: 3'- -UCG-ACUGUGGGa-----AGc-GCGCCA-UGCCC- -5' |
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18301 | 3' | -57.7 | NC_004681.1 | + | 59550 | 0.66 | 0.69899 |
Target: 5'- uAGCUGACgccuccccagguGCCCUUCaugguuuggaGgGCGGUGaugaggUGGGg -3' miRNA: 3'- -UCGACUG------------UGGGAAG----------CgCGCCAU------GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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