Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 22471 | 0.66 | 0.776601 |
Target: 5'- cCACUCGaCGUCGggGAGGUCCU-CGc -3' miRNA: 3'- -GUGGGCgGCGGCuaCUUCAGGAaGUc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 60211 | 0.66 | 0.736637 |
Target: 5'- aACCCGCUGCCguacagccaggcGAUGGAGUCa----- -3' miRNA: 3'- gUGGGCGGCGG------------CUACUUCAGgaaguc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 21340 | 0.66 | 0.755859 |
Target: 5'- gGCUgGCCGUgaGAUgcagaccGAGGUCCUUUAGg -3' miRNA: 3'- gUGGgCGGCGg-CUA-------CUUCAGGAAGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 37808 | 0.66 | 0.776601 |
Target: 5'- aGCCUGCUGCCcugauggucGGUGAGGUUgaUCAc -3' miRNA: 3'- gUGGGCGGCGG---------CUACUUCAGgaAGUc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 41068 | 0.66 | 0.763829 |
Target: 5'- gGCgCCGCCGCCGAUGugcucaccgaacgCCU-CAGc -3' miRNA: 3'- gUG-GGCGGCGGCUACuuca---------GGAaGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 14983 | 0.66 | 0.736637 |
Target: 5'- aCAUCgaGCCGgUGAUGAAGaCCUUCGc -3' miRNA: 3'- -GUGGg-CGGCgGCUACUUCaGGAAGUc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 60202 | 0.66 | 0.726371 |
Target: 5'- gCACCCGCCGCgCGggGAucacgCCUaguggCGGa -3' miRNA: 3'- -GUGGGCGGCG-GCuaCUuca--GGAa----GUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 11859 | 0.67 | 0.716017 |
Target: 5'- aAgCgGCCaCCGggGAAGUCCUcgcUCAGg -3' miRNA: 3'- gUgGgCGGcGGCuaCUUCAGGA---AGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 17988 | 0.67 | 0.716017 |
Target: 5'- --gCCGCCGCCGcccagGAAuUCCUUCuGg -3' miRNA: 3'- gugGGCGGCGGCua---CUUcAGGAAGuC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 51156 | 0.67 | 0.663279 |
Target: 5'- cCACCCcaggaccuaGCCGCCGAgucaGcAGUCC-UCGGc -3' miRNA: 3'- -GUGGG---------CGGCGGCUa---CuUCAGGaAGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 7376 | 0.67 | 0.673921 |
Target: 5'- aGCCCGCgGCCGAgaaGAagcccccgcccaAGUCCgUCGa -3' miRNA: 3'- gUGGGCGgCGGCUa--CU------------UCAGGaAGUc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 61666 | 0.67 | 0.716017 |
Target: 5'- aAgCCGCCGCCGcgGAGG-CCg---- -3' miRNA: 3'- gUgGGCGGCGGCuaCUUCaGGaaguc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 2124 | 0.68 | 0.641921 |
Target: 5'- cCACCC-CCGCUGAUGuGGUaacCCggCAGg -3' miRNA: 3'- -GUGGGcGGCGGCUACuUCA---GGaaGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 51682 | 0.68 | 0.609843 |
Target: 5'- aGCCCGuuGCCGGUGGGuugcUCCaccUCGGa -3' miRNA: 3'- gUGGGCggCGGCUACUUc---AGGa--AGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 26357 | 0.68 | 0.652609 |
Target: 5'- ---aUGCCGCCGA-GGAGUCCgUCAu -3' miRNA: 3'- guggGCGGCGGCUaCUUCAGGaAGUc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 24935 | 0.71 | 0.436797 |
Target: 5'- cCGCCCGCgccgccgaCGCCGAUGAGGUCg----- -3' miRNA: 3'- -GUGGGCG--------GCGGCUACUUCAGgaaguc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 11960 | 0.72 | 0.409127 |
Target: 5'- aACCUGCCGCUGGaGAAGUCCc---- -3' miRNA: 3'- gUGGGCGGCGGCUaCUUCAGGaaguc -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 15313 | 0.77 | 0.197413 |
Target: 5'- aCGCCCaGCgGgCCGAcguUGggGUCCUUCAGc -3' miRNA: 3'- -GUGGG-CGgC-GGCU---ACuuCAGGAAGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 56787 | 0.79 | 0.16424 |
Target: 5'- aGCUCGCCGUagaCGAUGAAG-CCUUCGGg -3' miRNA: 3'- gUGGGCGGCG---GCUACUUCaGGAAGUC- -5' |
|||||||
18301 | 5' | -56.2 | NC_004681.1 | + | 22044 | 0.81 | 0.11256 |
Target: 5'- aCGCCgGCCGCCGAcgaaGAGGUCCUUCc- -3' miRNA: 3'- -GUGGgCGGCGGCUa---CUUCAGGAAGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home