miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18302 3' -57.3 NC_004681.1 + 18475 0.66 0.753323
Target:  5'- gCCGCCGCcuggCCUgCCAUGUCgauggcgccaCCGgGGg -3'
miRNA:   3'- -GGUGGUGa---GGAgGGUGUAGa---------GGCgCC- -5'
18302 3' -57.3 NC_004681.1 + 60084 0.66 0.753323
Target:  5'- cCCGCaggCAUUgCUCCCACAUCUCgacaucgaaaGCGa -3'
miRNA:   3'- -GGUG---GUGAgGAGGGUGUAGAGg---------CGCc -5'
18302 3' -57.3 NC_004681.1 + 4325 0.66 0.743458
Target:  5'- cCUugCACUCaUCCCACGcuggcaUCCGCa- -3'
miRNA:   3'- -GGugGUGAGgAGGGUGUag----AGGCGcc -5'
18302 3' -57.3 NC_004681.1 + 46836 0.66 0.743458
Target:  5'- cCCACCACg-UUCaugacaGCGUCgaugCCGCGGa -3'
miRNA:   3'- -GGUGGUGagGAGgg----UGUAGa---GGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 64466 0.66 0.743458
Target:  5'- -gGCCAUUgUcgCCCACGccuUgUCCGCGGg -3'
miRNA:   3'- ggUGGUGAgGa-GGGUGU---AgAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 2122 0.66 0.733491
Target:  5'- gCCGCC-CUCCacgaCCACcuggCCGCGGc -3'
miRNA:   3'- -GGUGGuGAGGag--GGUGuagaGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 19966 0.66 0.733491
Target:  5'- uCCACCGCUUCUCCUucgccgACAacCUCCaggcCGGu -3'
miRNA:   3'- -GGUGGUGAGGAGGG------UGUa-GAGGc---GCC- -5'
18302 3' -57.3 NC_004681.1 + 4136 0.66 0.732489
Target:  5'- uCCACgGgUCCUCCUcCAUCggaguguUCCGCa- -3'
miRNA:   3'- -GGUGgUgAGGAGGGuGUAG-------AGGCGcc -5'
18302 3' -57.3 NC_004681.1 + 17427 0.66 0.722423
Target:  5'- gUCGCCGCgCUgaUCCUgcguguaGCGUC-CCGCGGg -3'
miRNA:   3'- -GGUGGUGaGG--AGGG-------UGUAGaGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 44727 0.66 0.713293
Target:  5'- aCCACCACcugcggcgCCUUCgACGUCgaggacucccUCGCGGg -3'
miRNA:   3'- -GGUGGUGa-------GGAGGgUGUAGa---------GGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 64549 0.66 0.713293
Target:  5'- uCCACCAgUCCUUCCuGCuUCUCggucaUGUGGc -3'
miRNA:   3'- -GGUGGUgAGGAGGG-UGuAGAG-----GCGCC- -5'
18302 3' -57.3 NC_004681.1 + 57987 0.66 0.713293
Target:  5'- uCCGCCGCUCCacgUCgUGag-CUCCGCGc -3'
miRNA:   3'- -GGUGGUGAGG---AGgGUguaGAGGCGCc -5'
18302 3' -57.3 NC_004681.1 + 27125 0.67 0.692806
Target:  5'- cUCAUCcggGCUCgUCCUGCAagcguUCUCgGCGGg -3'
miRNA:   3'- -GGUGG---UGAGgAGGGUGU-----AGAGgCGCC- -5'
18302 3' -57.3 NC_004681.1 + 22610 0.67 0.692806
Target:  5'- cCCACCucCUUCU-CCACGgacaCCGCGGg -3'
miRNA:   3'- -GGUGGu-GAGGAgGGUGUaga-GGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 16043 0.67 0.692806
Target:  5'- gCCGCCGC-UgUCaCCGCAUCcgCCGCa- -3'
miRNA:   3'- -GGUGGUGaGgAG-GGUGUAGa-GGCGcc -5'
18302 3' -57.3 NC_004681.1 + 58395 0.67 0.689713
Target:  5'- --gUUugUCCgcgugggcaagaagUCCCGCAccuUCUCCGCGGc -3'
miRNA:   3'- gguGGugAGG--------------AGGGUGU---AGAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 12789 0.67 0.672108
Target:  5'- -uGCCAg-CCUCCaUACGguugagCUCCGCGGc -3'
miRNA:   3'- ggUGGUgaGGAGG-GUGUa-----GAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 25592 0.67 0.661703
Target:  5'- uCC-CCGCUgagcgaccaacCCagUCCCACGUUUCUGCGa -3'
miRNA:   3'- -GGuGGUGA-----------GG--AGGGUGUAGAGGCGCc -5'
18302 3' -57.3 NC_004681.1 + 71712 0.67 0.661703
Target:  5'- aUguCCGCUCCgcugagUUCCACG-CUCCGCGc -3'
miRNA:   3'- -GguGGUGAGG------AGGGUGUaGAGGCGCc -5'
18302 3' -57.3 NC_004681.1 + 33559 0.67 0.660661
Target:  5'- gCGCCGCUCUUCgagcgcuUCAC-UC-CCGCGGc -3'
miRNA:   3'- gGUGGUGAGGAG-------GGUGuAGaGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.