miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18302 3' -57.3 NC_004681.1 + 33173 1.12 0.00069
Target:  5'- uCCACCACUCCUCCCACAUCUCCGCGGg -3'
miRNA:   3'- -GGUGGUGAGGAGGGUGUAGAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 54314 0.8 0.134233
Target:  5'- uCCACCACUCC-CCCAgCAUCaUCuUGCGGa -3'
miRNA:   3'- -GGUGGUGAGGaGGGU-GUAG-AG-GCGCC- -5'
18302 3' -57.3 NC_004681.1 + 20130 0.77 0.188239
Target:  5'- gCgGCCAC-CCgUCCugGUCUCCGCGGu -3'
miRNA:   3'- -GgUGGUGaGGaGGGugUAGAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 7351 0.77 0.208363
Target:  5'- gCCGCCGCggcgaagCCUCCCGCcaagC-CCGCGGc -3'
miRNA:   3'- -GGUGGUGa------GGAGGGUGua--GaGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 48604 0.75 0.266875
Target:  5'- gCGCCACcCgCUCCgGguUCUCCGCGGc -3'
miRNA:   3'- gGUGGUGaG-GAGGgUguAGAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 8018 0.74 0.30081
Target:  5'- aCCACCACUUCUUCCGgcucCUCgGCGGc -3'
miRNA:   3'- -GGUGGUGAGGAGGGUgua-GAGgCGCC- -5'
18302 3' -57.3 NC_004681.1 + 39785 0.73 0.337981
Target:  5'- cCCGCCGCgcgaccaucgCCUCCCACGcCU-CGUGGg -3'
miRNA:   3'- -GGUGGUGa---------GGAGGGUGUaGAgGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 45345 0.73 0.341095
Target:  5'- -gGCCGCUCCgacgucgagccauacUCCCGCAcCUCCaagGCGGg -3'
miRNA:   3'- ggUGGUGAGG---------------AGGGUGUaGAGG---CGCC- -5'
18302 3' -57.3 NC_004681.1 + 14361 0.73 0.345805
Target:  5'- -gGCCAcCUCCgCCCGCAugaUCgCCGCGGa -3'
miRNA:   3'- ggUGGU-GAGGaGGGUGU---AGaGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 5886 0.72 0.378381
Target:  5'- gCgGCCAgCgUUCUUCCACAUCgCCGCGGu -3'
miRNA:   3'- -GgUGGU-G-AGGAGGGUGUAGaGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 33684 0.72 0.404131
Target:  5'- gCGCUugUCCUUgCGCuUCgCCGCGGg -3'
miRNA:   3'- gGUGGugAGGAGgGUGuAGaGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 23663 0.72 0.404131
Target:  5'- cCCAUCGagcuggCCUCCUACGcgcccgcCUCCGCGGa -3'
miRNA:   3'- -GGUGGUga----GGAGGGUGUa------GAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 6109 0.72 0.404131
Target:  5'- aCACCAUggcgauUCCgauugCCCGCAUCcagUCCGCGa -3'
miRNA:   3'- gGUGGUG------AGGa----GGGUGUAG---AGGCGCc -5'
18302 3' -57.3 NC_004681.1 + 41814 0.72 0.412957
Target:  5'- aCGCCGcCUCCcggggcauuUCCCuGCAgcgggccgaUCUCCGCGGa -3'
miRNA:   3'- gGUGGU-GAGG---------AGGG-UGU---------AGAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 6426 0.72 0.412957
Target:  5'- gCCAgCACUCCUgUCGCGUCUCUGg-- -3'
miRNA:   3'- -GGUgGUGAGGAgGGUGUAGAGGCgcc -5'
18302 3' -57.3 NC_004681.1 + 63172 0.71 0.440133
Target:  5'- cCC-CCGCUCgacaCCCugAUgUCCGCGGc -3'
miRNA:   3'- -GGuGGUGAGga--GGGugUAgAGGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 63310 0.71 0.457861
Target:  5'- cCCACCGggcgaagccgaacCUCUUCCCG-AUCUccgCCGCGGa -3'
miRNA:   3'- -GGUGGU-------------GAGGAGGGUgUAGA---GGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 62405 0.7 0.486606
Target:  5'- aCCACCAgucggugcgcUUCCaUCCCGCGUCgaacuccUCgGCGGu -3'
miRNA:   3'- -GGUGGU----------GAGG-AGGGUGUAG-------AGgCGCC- -5'
18302 3' -57.3 NC_004681.1 + 28240 0.7 0.487579
Target:  5'- gCCGCCGCUCgaUCCGCcgCcgccguugcCCGCGGg -3'
miRNA:   3'- -GGUGGUGAGgaGGGUGuaGa--------GGCGCC- -5'
18302 3' -57.3 NC_004681.1 + 34778 0.7 0.487579
Target:  5'- uCCGCCaACUCCUUgCCAU-UCUCgGUGGa -3'
miRNA:   3'- -GGUGG-UGAGGAG-GGUGuAGAGgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.