miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18302 5' -60.3 NC_004681.1 + 48759 0.66 0.523466
Target:  5'- cGCCAGGguucccgccaGCGuGGaGGCGGUGUCAUu -3'
miRNA:   3'- uCGGUCCaac-------UGC-CC-CCGCUACGGUA- -5'
18302 5' -60.3 NC_004681.1 + 27519 0.66 0.494354
Target:  5'- uGCCgAGGUcaaacccUG-CGGGGGUGAUGaCCu- -3'
miRNA:   3'- uCGG-UCCA-------ACuGCCCCCGCUAC-GGua -5'
18302 5' -60.3 NC_004681.1 + 27315 0.66 0.485468
Target:  5'- cGGCCAGGa----GGGGcGCGAcGCCGg -3'
miRNA:   3'- -UCGGUCCaacugCCCC-CGCUaCGGUa -5'
18302 5' -60.3 NC_004681.1 + 39644 0.66 0.485468
Target:  5'- aAGCUAGGcUGAagucaaccgcaaUGGGGGCGAggcagcaauUGCCc- -3'
miRNA:   3'- -UCGGUCCaACU------------GCCCCCGCU---------ACGGua -5'
18302 5' -60.3 NC_004681.1 + 44229 0.66 0.481544
Target:  5'- gGGCCAGGcccgcggccuCGGGGGUGAggcaggUGCCu- -3'
miRNA:   3'- -UCGGUCCaacu------GCCCCCGCU------ACGGua -5'
18302 5' -60.3 NC_004681.1 + 24751 0.67 0.456422
Target:  5'- cGGgCGGGUUGuCGGGGuccGCGGUGUUGUc -3'
miRNA:   3'- -UCgGUCCAACuGCCCC---CGCUACGGUA- -5'
18302 5' -60.3 NC_004681.1 + 25662 0.67 0.456422
Target:  5'- uGGCagaGGGUaUGGCcacaGGGGCGggGCCAg -3'
miRNA:   3'- -UCGg--UCCA-ACUGc---CCCCGCuaCGGUa -5'
18302 5' -60.3 NC_004681.1 + 62542 0.67 0.446949
Target:  5'- cGGCCAuucggguuuccuGGgcGGCGGagaGGGCGGUGUCGg -3'
miRNA:   3'- -UCGGU------------CCaaCUGCC---CCCGCUACGGUa -5'
18302 5' -60.3 NC_004681.1 + 2226 0.67 0.446949
Target:  5'- uGCCGGGUUaccacaucaGCGGGGGUG--GCCAg -3'
miRNA:   3'- uCGGUCCAAc--------UGCCCCCGCuaCGGUa -5'
18302 5' -60.3 NC_004681.1 + 19080 0.67 0.437586
Target:  5'- uGUCAGGUgggUGAUGGGGGCu-UGCaCGc -3'
miRNA:   3'- uCGGUCCA---ACUGCCCCCGcuACG-GUa -5'
18302 5' -60.3 NC_004681.1 + 21574 0.67 0.437586
Target:  5'- gAGUCGGGgcGAuguucacacccuCGGGGGCGuaggcauUGCCGg -3'
miRNA:   3'- -UCGGUCCaaCU------------GCCCCCGCu------ACGGUa -5'
18302 5' -60.3 NC_004681.1 + 18223 0.67 0.410189
Target:  5'- gGGCCGaccugacccGGUgccUGGcCGGGGGCGccgAUGCCGg -3'
miRNA:   3'- -UCGGU---------CCA---ACU-GCCCCCGC---UACGGUa -5'
18302 5' -60.3 NC_004681.1 + 47300 0.68 0.375369
Target:  5'- uGGCCAgGGUUGuCGGuGGCGAacuUGCCc- -3'
miRNA:   3'- -UCGGU-CCAACuGCCcCCGCU---ACGGua -5'
18302 5' -60.3 NC_004681.1 + 18731 0.69 0.33474
Target:  5'- cGCCaAGGgcGACGGcGGCGAgGCCGc -3'
miRNA:   3'- uCGG-UCCaaCUGCCcCCGCUaCGGUa -5'
18302 5' -60.3 NC_004681.1 + 30964 0.69 0.31195
Target:  5'- gGGCUccagcGGGUcGGCGGGcGGCG-UGCCGUc -3'
miRNA:   3'- -UCGG-----UCCAaCUGCCC-CCGCuACGGUA- -5'
18302 5' -60.3 NC_004681.1 + 26831 0.7 0.276624
Target:  5'- uAGCCgAGGUUGGCcGGGGCGG-GCUu- -3'
miRNA:   3'- -UCGG-UCCAACUGcCCCCGCUaCGGua -5'
18302 5' -60.3 NC_004681.1 + 6136 0.7 0.276624
Target:  5'- cGGuCCAGGaUGugGacgaugggaGGGGCGAUGUCGUa -3'
miRNA:   3'- -UC-GGUCCaACugC---------CCCCGCUACGGUA- -5'
18302 5' -60.3 NC_004681.1 + 7189 0.71 0.257003
Target:  5'- uGCCAGcGUUGAggaguuccCGGuGGGgGGUGCCGUc -3'
miRNA:   3'- uCGGUC-CAACU--------GCC-CCCgCUACGGUA- -5'
18302 5' -60.3 NC_004681.1 + 14653 0.72 0.226852
Target:  5'- cGGCCGuGG-UGGCGGuggcGGCGAUGCCGa -3'
miRNA:   3'- -UCGGU-CCaACUGCCc---CCGCUACGGUa -5'
18302 5' -60.3 NC_004681.1 + 50921 0.72 0.19975
Target:  5'- gAGCUGGG-UGGCGGuGGGCGggGUCAc -3'
miRNA:   3'- -UCGGUCCaACUGCC-CCCGCuaCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.