Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18302 | 5' | -60.3 | NC_004681.1 | + | 33134 | 1.06 | 0.000688 |
Target: 5'- gAGCCAGGUUGACGGGGGCGAUGCCAUg -3' miRNA: 3'- -UCGGUCCAACUGCCCCCGCUACGGUA- -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 52328 | 0.75 | 0.142158 |
Target: 5'- cGGCCAGGUUGGucagguCGGGgauGGCGggGCCGUu -3' miRNA: 3'- -UCGGUCCAACU------GCCC---CCGCuaCGGUA- -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 20426 | 0.73 | 0.175512 |
Target: 5'- gAGCucguaCAGGUUGccuuGCGGGGGCagGAUGCCGa -3' miRNA: 3'- -UCG-----GUCCAAC----UGCCCCCG--CUACGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 50921 | 0.72 | 0.19975 |
Target: 5'- gAGCUGGG-UGGCGGuGGGCGggGUCAc -3' miRNA: 3'- -UCGGUCCaACUGCC-CCCGCuaCGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 14653 | 0.72 | 0.226852 |
Target: 5'- cGGCCGuGG-UGGCGGuggcGGCGAUGCCGa -3' miRNA: 3'- -UCGGU-CCaACUGCCc---CCGCUACGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 7189 | 0.71 | 0.257003 |
Target: 5'- uGCCAGcGUUGAggaguuccCGGuGGGgGGUGCCGUc -3' miRNA: 3'- uCGGUC-CAACU--------GCC-CCCgCUACGGUA- -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 6136 | 0.7 | 0.276624 |
Target: 5'- cGGuCCAGGaUGugGacgaugggaGGGGCGAUGUCGUa -3' miRNA: 3'- -UC-GGUCCaACugC---------CCCCGCUACGGUA- -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 26831 | 0.7 | 0.276624 |
Target: 5'- uAGCCgAGGUUGGCcGGGGCGG-GCUu- -3' miRNA: 3'- -UCGG-UCCAACUGcCCCCGCUaCGGua -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 30964 | 0.69 | 0.31195 |
Target: 5'- gGGCUccagcGGGUcGGCGGGcGGCG-UGCCGUc -3' miRNA: 3'- -UCGG-----UCCAaCUGCCC-CCGCuACGGUA- -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 18731 | 0.69 | 0.33474 |
Target: 5'- cGCCaAGGgcGACGGcGGCGAgGCCGc -3' miRNA: 3'- uCGG-UCCaaCUGCCcCCGCUaCGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 47300 | 0.68 | 0.375369 |
Target: 5'- uGGCCAgGGUUGuCGGuGGCGAacuUGCCc- -3' miRNA: 3'- -UCGGU-CCAACuGCCcCCGCU---ACGGua -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 18223 | 0.67 | 0.410189 |
Target: 5'- gGGCCGaccugacccGGUgccUGGcCGGGGGCGccgAUGCCGg -3' miRNA: 3'- -UCGGU---------CCA---ACU-GCCCCCGC---UACGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 19080 | 0.67 | 0.437586 |
Target: 5'- uGUCAGGUgggUGAUGGGGGCu-UGCaCGc -3' miRNA: 3'- uCGGUCCA---ACUGCCCCCGcuACG-GUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 21574 | 0.67 | 0.437586 |
Target: 5'- gAGUCGGGgcGAuguucacacccuCGGGGGCGuaggcauUGCCGg -3' miRNA: 3'- -UCGGUCCaaCU------------GCCCCCGCu------ACGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 2226 | 0.67 | 0.446949 |
Target: 5'- uGCCGGGUUaccacaucaGCGGGGGUG--GCCAg -3' miRNA: 3'- uCGGUCCAAc--------UGCCCCCGCuaCGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 62542 | 0.67 | 0.446949 |
Target: 5'- cGGCCAuucggguuuccuGGgcGGCGGagaGGGCGGUGUCGg -3' miRNA: 3'- -UCGGU------------CCaaCUGCC---CCCGCUACGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 25662 | 0.67 | 0.456422 |
Target: 5'- uGGCagaGGGUaUGGCcacaGGGGCGggGCCAg -3' miRNA: 3'- -UCGg--UCCA-ACUGc---CCCCGCuaCGGUa -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 24751 | 0.67 | 0.456422 |
Target: 5'- cGGgCGGGUUGuCGGGGuccGCGGUGUUGUc -3' miRNA: 3'- -UCgGUCCAACuGCCCC---CGCUACGGUA- -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 44229 | 0.66 | 0.481544 |
Target: 5'- gGGCCAGGcccgcggccuCGGGGGUGAggcaggUGCCu- -3' miRNA: 3'- -UCGGUCCaacu------GCCCCCGCU------ACGGua -5' |
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18302 | 5' | -60.3 | NC_004681.1 | + | 27315 | 0.66 | 0.485468 |
Target: 5'- cGGCCAGGa----GGGGcGCGAcGCCGg -3' miRNA: 3'- -UCGGUCCaacugCCCC-CGCUaCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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