miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18303 3' -56.4 NC_004681.1 + 45555 0.65 0.775498
Target:  5'- -cGGAGUGGA-CGCugUCGuucaucaccacaccGAGGGCGGCc -3'
miRNA:   3'- gcCCUCACUUcGCG--AGC--------------UUCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 16596 0.66 0.768671
Target:  5'- uGGGAGUuccAGuUGC-CGggGcGCGGCg -3'
miRNA:   3'- gCCCUCAcu-UC-GCGaGCuuCuCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 61202 0.66 0.768671
Target:  5'- aCGGccugcccaccuuGGGUGAAccGCaGCUCGggGucGGCGGUc -3'
miRNA:   3'- -GCC------------CUCACUU--CG-CGAGCuuC--UCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 62303 0.66 0.758808
Target:  5'- gCGGGAugGAAGCGCacCGAcuGGUGGUu -3'
miRNA:   3'- -GCCCUcaCUUCGCGa-GCUucUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 57999 0.66 0.749828
Target:  5'- aGGGAG-GAGGCGCUCuaccaacgccucaaGAggcucaagcagacggAGgaaucGGCGGCa -3'
miRNA:   3'- gCCCUCaCUUCGCGAG--------------CU---------------UC-----UCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 25054 0.66 0.738729
Target:  5'- cCGGGGGUGAacuggaugaugcGGgGCcgucgaagUCGAcgccgcgcagaAGGGUGGCa -3'
miRNA:   3'- -GCCCUCACU------------UCgCG--------AGCU-----------UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 43834 0.66 0.728534
Target:  5'- aGGuGGUGGaaugAGCGUgCGAguucaccgAGGGCGGCg -3'
miRNA:   3'- gCCcUCACU----UCGCGaGCU--------UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 16670 0.66 0.728534
Target:  5'- cCGGGGGcuUGuAGCGCUCGu----CGGCa -3'
miRNA:   3'- -GCCCUC--ACuUCGCGAGCuucucGCCG- -5'
18303 3' -56.4 NC_004681.1 + 27462 0.66 0.727509
Target:  5'- cCGGGGuuccgccGuUGAGGgucaGCUCGAaugGGGGCGGUg -3'
miRNA:   3'- -GCCCU-------C-ACUUCg---CGAGCU---UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 61695 0.66 0.725458
Target:  5'- uGGGAGUGGgugcAGUcaaugugcuuccuuGUUCGGAGGG-GGCc -3'
miRNA:   3'- gCCCUCACU----UCG--------------CGAGCUUCUCgCCG- -5'
18303 3' -56.4 NC_004681.1 + 44694 0.67 0.697449
Target:  5'- aCGGG-GUGAguAGUGCggcggccgCGAGcgcGGCGGCg -3'
miRNA:   3'- -GCCCuCACU--UCGCGa-------GCUUc--UCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 18297 0.67 0.66477
Target:  5'- cCGGGGGUgcgccggGAGGCGCUCcaggaccgccagGGAGAGUaGGa -3'
miRNA:   3'- -GCCCUCA-------CUUCGCGAG------------CUUCUCG-CCg -5'
18303 3' -56.4 NC_004681.1 + 31000 0.68 0.659466
Target:  5'- uGGGcgcacaacuacgacuGGUGcAAGCGCaacgCGGAcAGCGGCa -3'
miRNA:   3'- gCCC---------------UCAC-UUCGCGa---GCUUcUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 60905 0.68 0.655218
Target:  5'- uGGGGGUGuAGUGCUgGAccccuucgcgGGcAGCGGa -3'
miRNA:   3'- gCCCUCACuUCGCGAgCU----------UC-UCGCCg -5'
18303 3' -56.4 NC_004681.1 + 36252 0.68 0.655218
Target:  5'- aCGGGAGcUGu-GCGCcgaaacCGAAGAcgagaagugGCGGCg -3'
miRNA:   3'- -GCCCUC-ACuuCGCGa-----GCUUCU---------CGCCG- -5'
18303 3' -56.4 NC_004681.1 + 5927 0.68 0.644587
Target:  5'- uCGGGGcUGAGGCGCUUcucgugccgcaGuaccagguuGGGGCGGCc -3'
miRNA:   3'- -GCCCUcACUUCGCGAG-----------Cu--------UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 40547 0.68 0.606289
Target:  5'- aGGGAGUGGAGCcacucaccgagcgucGC-CGAGGcaaaCGGCg -3'
miRNA:   3'- gCCCUCACUUCG---------------CGaGCUUCuc--GCCG- -5'
18303 3' -56.4 NC_004681.1 + 48194 0.68 0.602043
Target:  5'- cCGGG-GUGAGGgGCUCGu--GGUGGa -3'
miRNA:   3'- -GCCCuCACUUCgCGAGCuucUCGCCg -5'
18303 3' -56.4 NC_004681.1 + 36373 0.69 0.590389
Target:  5'- aCGGcGGGUGGguGGCGCacugCGAAGAccucccaGUGGCc -3'
miRNA:   3'- -GCC-CUCACU--UCGCGa---GCUUCU-------CGCCG- -5'
18303 3' -56.4 NC_004681.1 + 48784 0.7 0.518577
Target:  5'- -uGGAGUGAGGCcgUCGAGGGcGCGGg -3'
miRNA:   3'- gcCCUCACUUCGcgAGCUUCU-CGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.