miRNA display CGI


Results 21 - 29 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18303 3' -56.4 NC_004681.1 + 16596 0.66 0.768671
Target:  5'- uGGGAGUuccAGuUGC-CGggGcGCGGCg -3'
miRNA:   3'- gCCCUCAcu-UC-GCGaGCuuCuCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 25054 0.66 0.738729
Target:  5'- cCGGGGGUGAacuggaugaugcGGgGCcgucgaagUCGAcgccgcgcagaAGGGUGGCa -3'
miRNA:   3'- -GCCCUCACU------------UCgCG--------AGCU-----------UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 16670 0.66 0.728534
Target:  5'- cCGGGGGcuUGuAGCGCUCGu----CGGCa -3'
miRNA:   3'- -GCCCUC--ACuUCGCGAGCuucucGCCG- -5'
18303 3' -56.4 NC_004681.1 + 43834 0.66 0.728534
Target:  5'- aGGuGGUGGaaugAGCGUgCGAguucaccgAGGGCGGCg -3'
miRNA:   3'- gCCcUCACU----UCGCGaGCU--------UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 27462 0.66 0.727509
Target:  5'- cCGGGGuuccgccGuUGAGGgucaGCUCGAaugGGGGCGGUg -3'
miRNA:   3'- -GCCCU-------C-ACUUCg---CGAGCU---UCUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 61695 0.66 0.725458
Target:  5'- uGGGAGUGGgugcAGUcaaugugcuuccuuGUUCGGAGGG-GGCc -3'
miRNA:   3'- gCCCUCACU----UCG--------------CGAGCUUCUCgCCG- -5'
18303 3' -56.4 NC_004681.1 + 62303 0.66 0.758808
Target:  5'- gCGGGAugGAAGCGCacCGAcuGGUGGUu -3'
miRNA:   3'- -GCCCUcaCUUCGCGa-GCUucUCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 57999 0.66 0.749828
Target:  5'- aGGGAG-GAGGCGCUCuaccaacgccucaaGAggcucaagcagacggAGgaaucGGCGGCa -3'
miRNA:   3'- gCCCUCaCUUCGCGAG--------------CU---------------UC-----UCGCCG- -5'
18303 3' -56.4 NC_004681.1 + 45555 0.65 0.775498
Target:  5'- -cGGAGUGGA-CGCugUCGuucaucaccacaccGAGGGCGGCc -3'
miRNA:   3'- gcCCUCACUUcGCG--AGC--------------UUCUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.