miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18303 5' -55.3 NC_004681.1 + 18740 0.66 0.809697
Target:  5'- -cGACGG-CggCGA-GGCCgcgcgugaCACCGCa -3'
miRNA:   3'- aaCUGCCaGa-GCUaCCGGaa------GUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 41783 0.66 0.809697
Target:  5'- ----aGG-UUCGAcGGCCUUCgcGCCGCa -3'
miRNA:   3'- aacugCCaGAGCUaCCGGAAG--UGGCG- -5'
18303 5' -55.3 NC_004681.1 + 56210 0.66 0.809697
Target:  5'- -aGcCGGUCUCGuucgGGUCcUCGuuGCg -3'
miRNA:   3'- aaCuGCCAGAGCua--CCGGaAGUggCG- -5'
18303 5' -55.3 NC_004681.1 + 18509 0.66 0.806905
Target:  5'- -cGAgGGUCUC-AUGGagaCCUuccugcugaacgacUCACCGCu -3'
miRNA:   3'- aaCUgCCAGAGcUACC---GGA--------------AGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 54353 0.66 0.790791
Target:  5'- -cGGCGGUCgUGAUgcGGUCUUCGucCUGCu -3'
miRNA:   3'- aaCUGCCAGaGCUA--CCGGAAGU--GGCG- -5'
18303 5' -55.3 NC_004681.1 + 7348 0.66 0.787898
Target:  5'- -gGACGGccgcgUCgUgGAUGGCCUggagaagcgcggugUCGCCGUu -3'
miRNA:   3'- aaCUGCC-----AG-AgCUACCGGA--------------AGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 57873 0.66 0.771248
Target:  5'- --cGCGGUCUcCGGUGGCggugUCGCCu- -3'
miRNA:   3'- aacUGCCAGA-GCUACCGga--AGUGGcg -5'
18303 5' -55.3 NC_004681.1 + 49202 0.66 0.771248
Target:  5'- -aGAUGGUCUCGGaacGGCUgaagUgACcCGCg -3'
miRNA:   3'- aaCUGCCAGAGCUa--CCGGa---AgUG-GCG- -5'
18303 5' -55.3 NC_004681.1 + 60433 0.66 0.761263
Target:  5'- -cGACGGgCUcaaaCGAUGGUUUUUAgCGCg -3'
miRNA:   3'- aaCUGCCaGA----GCUACCGGAAGUgGCG- -5'
18303 5' -55.3 NC_004681.1 + 24007 0.66 0.761263
Target:  5'- gUUGACGauuGUgUCGAgcaUGGCCUggaugCGuCCGCg -3'
miRNA:   3'- -AACUGC---CAgAGCU---ACCGGAa----GU-GGCG- -5'
18303 5' -55.3 NC_004681.1 + 13371 0.67 0.751151
Target:  5'- ---uCGGaCUCGAUGGCCUgga-CGCg -3'
miRNA:   3'- aacuGCCaGAGCUACCGGAagugGCG- -5'
18303 5' -55.3 NC_004681.1 + 38903 0.67 0.751151
Target:  5'- -gGAUGGUCUCGgcGGaCUUgcgCGCgGCc -3'
miRNA:   3'- aaCUGCCAGAGCuaCC-GGAa--GUGgCG- -5'
18303 5' -55.3 NC_004681.1 + 7479 0.67 0.740921
Target:  5'- -gGGCGGgggcuucuUCUCGGccgcgggcuUGGCgggaggCUUCGCCGCg -3'
miRNA:   3'- aaCUGCC--------AGAGCU---------ACCG------GAAGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 12604 0.67 0.709641
Target:  5'- -cGGCGGUCUCGccguUGcuGCCUU--CCGCg -3'
miRNA:   3'- aaCUGCCAGAGCu---AC--CGGAAguGGCG- -5'
18303 5' -55.3 NC_004681.1 + 54849 0.67 0.699053
Target:  5'- aUGACGaugacCUCGggGGCCUggUCAUCGUc -3'
miRNA:   3'- aACUGCca---GAGCuaCCGGA--AGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 26375 0.67 0.699053
Target:  5'- -gGAUGaGUCUCGGUGGUgaU-GCCGCc -3'
miRNA:   3'- aaCUGC-CAGAGCUACCGgaAgUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 45096 0.67 0.696927
Target:  5'- --cGCGGUCUCGcucaagaccggGGCCgaCGCCGUc -3'
miRNA:   3'- aacUGCCAGAGCua---------CCGGaaGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 22569 0.68 0.656179
Target:  5'- -aGAUGGUCUgGGUcGCCa--GCCGCa -3'
miRNA:   3'- aaCUGCCAGAgCUAcCGGaagUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 27428 0.68 0.656179
Target:  5'- -gGGCGGUgugacCUCGAUGucgugcGCCacggugaugUUCACCGCg -3'
miRNA:   3'- aaCUGCCA-----GAGCUAC------CGG---------AAGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 28188 0.68 0.645381
Target:  5'- gUGACGGUggCGAUGGCUa-CACCa- -3'
miRNA:   3'- aACUGCCAgaGCUACCGGaaGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.