miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18303 5' -55.3 NC_004681.1 + 14748 0.74 0.323447
Target:  5'- --cACGGUCUCGAaGGCCgguuuccgugaCGCCGCg -3'
miRNA:   3'- aacUGCCAGAGCUaCCGGaa---------GUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 18740 0.66 0.809697
Target:  5'- -cGACGG-CggCGA-GGCCgcgcgugaCACCGCa -3'
miRNA:   3'- aaCUGCCaGa-GCUaCCGGaa------GUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 41783 0.66 0.809697
Target:  5'- ----aGG-UUCGAcGGCCUUCgcGCCGCa -3'
miRNA:   3'- aacugCCaGAGCUaCCGGAAG--UGGCG- -5'
18303 5' -55.3 NC_004681.1 + 18509 0.66 0.806905
Target:  5'- -cGAgGGUCUC-AUGGagaCCUuccugcugaacgacUCACCGCu -3'
miRNA:   3'- aaCUgCCAGAGcUACC---GGA--------------AGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 49202 0.66 0.771248
Target:  5'- -aGAUGGUCUCGGaacGGCUgaagUgACcCGCg -3'
miRNA:   3'- aaCUGCCAGAGCUa--CCGGa---AgUG-GCG- -5'
18303 5' -55.3 NC_004681.1 + 45096 0.67 0.696927
Target:  5'- --cGCGGUCUCGcucaagaccggGGCCgaCGCCGUc -3'
miRNA:   3'- aacUGCCAGAGCua---------CCGGaaGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 22569 0.68 0.656179
Target:  5'- -aGAUGGUCUgGGUcGCCa--GCCGCa -3'
miRNA:   3'- aaCUGCCAGAgCUAcCGGaagUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 28188 0.68 0.645381
Target:  5'- gUGACGGUggCGAUGGCUa-CACCa- -3'
miRNA:   3'- aACUGCCAgaGCUACCGGaaGUGGcg -5'
18303 5' -55.3 NC_004681.1 + 16715 0.69 0.634572
Target:  5'- aUGACGGg--CGGUGGCagcgauggCACCGUc -3'
miRNA:   3'- aACUGCCagaGCUACCGgaa-----GUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 54510 0.71 0.466891
Target:  5'- -aGAgcUGGUCccaggaUCGGUGGCCcgagaUCACCGCa -3'
miRNA:   3'- aaCU--GCCAG------AGCUACCGGa----AGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 26375 0.67 0.699053
Target:  5'- -gGAUGaGUCUCGGUGGUgaU-GCCGCc -3'
miRNA:   3'- aaCUGC-CAGAGCUACCGgaAgUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 54849 0.67 0.699053
Target:  5'- aUGACGaugacCUCGggGGCCUggUCAUCGUc -3'
miRNA:   3'- aACUGCca---GAGCuaCCGGA--AGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 27428 0.68 0.656179
Target:  5'- -gGGCGGUgugacCUCGAUGucgugcGCCacggugaugUUCACCGCg -3'
miRNA:   3'- aaCUGCCA-----GAGCUAC------CGG---------AAGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 16243 0.68 0.645381
Target:  5'- -cGACGG----GAUGGCCgccagCGCCGCg -3'
miRNA:   3'- aaCUGCCagagCUACCGGaa---GUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 20019 0.69 0.634572
Target:  5'- gUUGAgcaGGcCcgCGGUGGCCUUCauGCCGUg -3'
miRNA:   3'- -AACUg--CCaGa-GCUACCGGAAG--UGGCG- -5'
18303 5' -55.3 NC_004681.1 + 30361 0.7 0.569986
Target:  5'- -cGGUGGUCUCGAcgccguaccGGCCgcCGCCGCu -3'
miRNA:   3'- aaCUGCCAGAGCUa--------CCGGaaGUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 39251 0.7 0.531962
Target:  5'- aUGcCGGUCUCGGUGaacagcacgaugagcGCCUugUCGCgGCg -3'
miRNA:   3'- aACuGCCAGAGCUAC---------------CGGA--AGUGgCG- -5'
18303 5' -55.3 NC_004681.1 + 68994 0.72 0.437825
Target:  5'- -cGAUGGUCagcgccUCGAUGGCgUcgGCCGCg -3'
miRNA:   3'- aaCUGCCAG------AGCUACCGgAagUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 16023 0.78 0.201379
Target:  5'- -cGAUGGcCUgGAUGGUCUUgACCGCg -3'
miRNA:   3'- aaCUGCCaGAgCUACCGGAAgUGGCG- -5'
18303 5' -55.3 NC_004681.1 + 56210 0.66 0.809697
Target:  5'- -aGcCGGUCUCGuucgGGUCcUCGuuGCg -3'
miRNA:   3'- aaCuGCCAGAGCua--CCGGaAGUggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.