miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 40042 0.66 0.716397
Target:  5'- gCGCGGaUCGACUuguCGuugaGGCGGGCGa- -3'
miRNA:   3'- -GCGUC-AGCUGGu--GCug--CUGCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 39634 0.66 0.716397
Target:  5'- aGCGGUCGAUC-UGACGcCGGGauuGCc -3'
miRNA:   3'- gCGUCAGCUGGuGCUGCuGCCCg--UGu -5'
18304 5' -57.8 NC_004681.1 + 13410 0.66 0.716397
Target:  5'- cCGUuGUCGGCCuCGAucuccaggcuCGACaGGGCGCc -3'
miRNA:   3'- -GCGuCAGCUGGuGCU----------GCUG-CCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 25239 0.66 0.716397
Target:  5'- gGCGGccauggCGcCCGCGGCGGCGGuuggguGCGCu -3'
miRNA:   3'- gCGUCa-----GCuGGUGCUGCUGCC------CGUGu -5'
18304 5' -57.8 NC_004681.1 + 74201 0.66 0.706177
Target:  5'- cCGCAGUaGGCCACGACGuugguucCGuGGaUACGg -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGCu------GC-CC-GUGU- -5'
18304 5' -57.8 NC_004681.1 + 382 0.66 0.695892
Target:  5'- cCGCGGUCaaGACCugGGgcaaGGGCACc -3'
miRNA:   3'- -GCGUCAG--CUGGugCUgcugCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 39308 0.66 0.695892
Target:  5'- uGaCAGUCGACCAggcugacguccuCGACGucgaGGGCgaGCAu -3'
miRNA:   3'- gC-GUCAGCUGGU------------GCUGCug--CCCG--UGU- -5'
18304 5' -57.8 NC_004681.1 + 74393 0.66 0.695892
Target:  5'- aCGguGagGACUACGugGACagccuccguGaGGCACAc -3'
miRNA:   3'- -GCguCagCUGGUGCugCUG---------C-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 23567 0.66 0.695892
Target:  5'- gGCAcaguguucGUCaGCCACGAgGGCuacgaGGGCACGg -3'
miRNA:   3'- gCGU--------CAGcUGGUGCUgCUG-----CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 17803 0.66 0.695892
Target:  5'- aCGCAGgcCGACaucaACG-CGGCGGccGCGCAa -3'
miRNA:   3'- -GCGUCa-GCUGg---UGCuGCUGCC--CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 20019 0.66 0.685551
Target:  5'- gCGCuGUCGaACCGCGGagaccagGACGGGUg-- -3'
miRNA:   3'- -GCGuCAGC-UGGUGCUg------CUGCCCGugu -5'
18304 5' -57.8 NC_004681.1 + 47372 0.66 0.685551
Target:  5'- -uUAGUCGcccgccaacgcGCCACGGCGACGcGGUccuGCGa -3'
miRNA:   3'- gcGUCAGC-----------UGGUGCUGCUGC-CCG---UGU- -5'
18304 5' -57.8 NC_004681.1 + 50150 0.66 0.685551
Target:  5'- gGCAGUCGAUgGCGuCGGagacguagcCGaGGCGCu -3'
miRNA:   3'- gCGUCAGCUGgUGCuGCU---------GC-CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 52854 0.66 0.675164
Target:  5'- cCGCcaGGUCGACCAUGcagcGCGugaagacCGGGCAg- -3'
miRNA:   3'- -GCG--UCAGCUGGUGC----UGCu------GCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 43799 0.66 0.675164
Target:  5'- gGCGGUguACUGCGGCGGCGGGg--- -3'
miRNA:   3'- gCGUCAgcUGGUGCUGCUGCCCgugu -5'
18304 5' -57.8 NC_004681.1 + 59623 0.66 0.675164
Target:  5'- -cCGGUCGAUaaggucaACGACGugGaGGUGCAg -3'
miRNA:   3'- gcGUCAGCUGg------UGCUGCugC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 15664 0.66 0.675164
Target:  5'- aCGCAGaCG-CCaACGGCGACGucgaGCACGc -3'
miRNA:   3'- -GCGUCaGCuGG-UGCUGCUGCc---CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 5668 0.66 0.675164
Target:  5'- uGCGcUUGAUgGCGACccguGACGGGUGCAu -3'
miRNA:   3'- gCGUcAGCUGgUGCUG----CUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 47487 0.66 0.664739
Target:  5'- uCGCAG--GACCGCGuCGcCGuGGCGCGu -3'
miRNA:   3'- -GCGUCagCUGGUGCuGCuGC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 7142 0.66 0.664739
Target:  5'- cCGCGGUCGuucaugaaCGCGACGgagACGGuGCugAu -3'
miRNA:   3'- -GCGUCAGCug------GUGCUGC---UGCC-CGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.