Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 19619 | 0.74 | 0.28807 |
Target: 5'- gCGUGGUCGAUgACGGCGAgggUGGGCAa- -3' miRNA: 3'- -GCGUCAGCUGgUGCUGCU---GCCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 7459 | 0.74 | 0.277208 |
Target: 5'- cCGCGGgcuuggcgggaggcuUCG-CCGCGGCGGCGGGguCAg -3' miRNA: 3'- -GCGUC---------------AGCuGGUGCUGCUGCCCguGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 21335 | 0.75 | 0.218265 |
Target: 5'- aCGUGGUCGACCGCaGCGGCGucacggguccuaccGGCACGu -3' miRNA: 3'- -GCGUCAGCUGGUGcUGCUGC--------------CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 21424 | 0.75 | 0.249024 |
Target: 5'- uGCGGUCGACCACGuccACGACGauGGuCGCc -3' miRNA: 3'- gCGUCAGCUGGUGC---UGCUGC--CC-GUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24824 | 0.78 | 0.15351 |
Target: 5'- aCGCGGUCGACCucaucggcgucgGCGGCG-CGGGCGg- -3' miRNA: 3'- -GCGUCAGCUGG------------UGCUGCuGCCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 19367 | 0.79 | 0.127612 |
Target: 5'- --gGGUCGACCACaccggccugGGCGACGGGUACAu -3' miRNA: 3'- gcgUCAGCUGGUG---------CUGCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 34111 | 1.08 | 0.001138 |
Target: 5'- cCGCAGUCGACCACGACGACGGGCACAc -3' miRNA: 3'- -GCGUCAGCUGGUGCUGCUGCCCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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