Results 41 - 60 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 50391 | 0.68 | 0.55013 |
Target: 5'- cCGCuaccaCGACUACGGCGACuGGUACu -3' miRNA: 3'- -GCGuca--GCUGGUGCUGCUGcCCGUGu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 40216 | 0.67 | 0.622854 |
Target: 5'- gGCGGUcacCGACCugG-CGACccccgGGGUGCAg -3' miRNA: 3'- gCGUCA---GCUGGugCuGCUG-----CCCGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 24731 | 0.67 | 0.61238 |
Target: 5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3' miRNA: 3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 54695 | 0.67 | 0.61238 |
Target: 5'- uGCcGUCGAuguCCACGAUGAUugcgGGGgGCAg -3' miRNA: 3'- gCGuCAGCU---GGUGCUGCUG----CCCgUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 48544 | 0.67 | 0.643816 |
Target: 5'- -aCGGUCGAgCGCGACGGCa-GCACc -3' miRNA: 3'- gcGUCAGCUgGUGCUGCUGccCGUGu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 61461 | 0.67 | 0.61238 |
Target: 5'- aGCuGUUGcccACCGCaGCGACGGGC-CGa -3' miRNA: 3'- gCGuCAGC---UGGUGcUGCUGCCCGuGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 5668 | 0.66 | 0.675164 |
Target: 5'- uGCGcUUGAUgGCGACccguGACGGGUGCAu -3' miRNA: 3'- gCGUcAGCUGgUGCUG----CUGCCCGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 59623 | 0.66 | 0.675164 |
Target: 5'- -cCGGUCGAUaaggucaACGACGugGaGGUGCAg -3' miRNA: 3'- gcGUCAGCUGg------UGCUGCugC-CCGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 43799 | 0.66 | 0.675164 |
Target: 5'- gGCGGUguACUGCGGCGGCGGGg--- -3' miRNA: 3'- gCGUCAgcUGGUGCUGCUGCCCgugu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 7142 | 0.66 | 0.664739 |
Target: 5'- cCGCGGUCGuucaugaaCGCGACGgagACGGuGCugAu -3' miRNA: 3'- -GCGUCAGCug------GUGCUGC---UGCC-CGugU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 47487 | 0.66 | 0.664739 |
Target: 5'- uCGCAG--GACCGCGuCGcCGuGGCGCGu -3' miRNA: 3'- -GCGUCagCUGGUGCuGCuGC-CCGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 52854 | 0.66 | 0.675164 |
Target: 5'- cCGCcaGGUCGACCAUGcagcGCGugaagacCGGGCAg- -3' miRNA: 3'- -GCG--UCAGCUGGUGC----UGCu------GCCCGUgu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 15664 | 0.66 | 0.675164 |
Target: 5'- aCGCAGaCG-CCaACGGCGACGucgaGCACGc -3' miRNA: 3'- -GCGUCaGCuGG-UGCUGCUGCc---CGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 20019 | 0.66 | 0.685551 |
Target: 5'- gCGCuGUCGaACCGCGGagaccagGACGGGUg-- -3' miRNA: 3'- -GCGuCAGC-UGGUGCUg------CUGCCCGugu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 25239 | 0.66 | 0.716397 |
Target: 5'- gGCGGccauggCGcCCGCGGCGGCGGuuggguGCGCu -3' miRNA: 3'- gCGUCa-----GCuGGUGCUGCUGCC------CGUGu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 74201 | 0.66 | 0.706177 |
Target: 5'- cCGCAGUaGGCCACGACGuugguucCGuGGaUACGg -3' miRNA: 3'- -GCGUCAgCUGGUGCUGCu------GC-CC-GUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 17803 | 0.66 | 0.695892 |
Target: 5'- aCGCAGgcCGACaucaACG-CGGCGGccGCGCAa -3' miRNA: 3'- -GCGUCa-GCUGg---UGCuGCUGCC--CGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 382 | 0.66 | 0.695892 |
Target: 5'- cCGCGGUCaaGACCugGGgcaaGGGCACc -3' miRNA: 3'- -GCGUCAG--CUGGugCUgcugCCCGUGu -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 23567 | 0.66 | 0.695892 |
Target: 5'- gGCAcaguguucGUCaGCCACGAgGGCuacgaGGGCACGg -3' miRNA: 3'- gCGU--------CAGcUGGUGCUgCUG-----CCCGUGU- -5' |
|||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 47372 | 0.66 | 0.685551 |
Target: 5'- -uUAGUCGcccgccaacgcGCCACGGCGACGcGGUccuGCGa -3' miRNA: 3'- gcGUCAGC-----------UGGUGCUGCUGC-CCG---UGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home