Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 34111 | 1.08 | 0.001138 |
Target: 5'- cCGCAGUCGACCACGACGACGGGCACAc -3' miRNA: 3'- -GCGUCAGCUGGUGCUGCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 19367 | 0.79 | 0.127612 |
Target: 5'- --gGGUCGACCACaccggccugGGCGACGGGUACAu -3' miRNA: 3'- gcgUCAGCUGGUG---------CUGCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24824 | 0.78 | 0.15351 |
Target: 5'- aCGCGGUCGACCucaucggcgucgGCGGCG-CGGGCGg- -3' miRNA: 3'- -GCGUCAGCUGG------------UGCUGCuGCCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 21335 | 0.75 | 0.218265 |
Target: 5'- aCGUGGUCGACCGCaGCGGCGucacggguccuaccGGCACGu -3' miRNA: 3'- -GCGUCAGCUGGUGcUGCUGC--------------CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 21424 | 0.75 | 0.249024 |
Target: 5'- uGCGGUCGACCACGuccACGACGauGGuCGCc -3' miRNA: 3'- gCGUCAGCUGGUGC---UGCUGC--CC-GUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 7459 | 0.74 | 0.277208 |
Target: 5'- cCGCGGgcuuggcgggaggcuUCG-CCGCGGCGGCGGGguCAg -3' miRNA: 3'- -GCGUC---------------AGCuGGUGCUGCUGCCCguGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 19619 | 0.74 | 0.28807 |
Target: 5'- gCGUGGUCGAUgACGGCGAgggUGGGCAa- -3' miRNA: 3'- -GCGUCAGCUGgUGCUGCU---GCCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 13624 | 0.73 | 0.316682 |
Target: 5'- gGCGGagCGaACCACGGCGGgaGGGCACu -3' miRNA: 3'- gCGUCa-GC-UGGUGCUGCUg-CCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 518 | 0.72 | 0.355385 |
Target: 5'- gGCcaucuuccgCGGCCGCGAgucccucaaCGACGGGCACAa -3' miRNA: 3'- gCGuca------GCUGGUGCU---------GCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24821 | 0.71 | 0.380157 |
Target: 5'- cCGguGUCGACUGCGAugcCGACccauGGCACGu -3' miRNA: 3'- -GCguCAGCUGGUGCU---GCUGc---CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 61766 | 0.71 | 0.405176 |
Target: 5'- gGCGG-CGGCCuccGCGGCGGCGGcuucugcGCGCAg -3' miRNA: 3'- gCGUCaGCUGG---UGCUGCUGCC-------CGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 63805 | 0.71 | 0.406057 |
Target: 5'- uGCAauuGUgCGACCAUGACGAgucCGcGGCGCAc -3' miRNA: 3'- gCGU---CA-GCUGGUGCUGCU---GC-CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 72243 | 0.71 | 0.423928 |
Target: 5'- gGCGGUUGAuggacuCCACGAUGGCGcGGUAUu -3' miRNA: 3'- gCGUCAGCU------GGUGCUGCUGC-CCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 34021 | 0.71 | 0.423928 |
Target: 5'- uCGUGGUCGACUGCGGaGACGaGGC-CAg -3' miRNA: 3'- -GCGUCAGCUGGUGCUgCUGC-CCGuGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24920 | 0.7 | 0.433039 |
Target: 5'- aCGCcgaugaGGUCGACCGCGuuGgcccauGCGGGCAUg -3' miRNA: 3'- -GCG------UCAGCUGGUGCugC------UGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 50391 | 0.7 | 0.433039 |
Target: 5'- aGC-GUCGGCCGCGGgGACGuGGCc-- -3' miRNA: 3'- gCGuCAGCUGGUGCUgCUGC-CCGugu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 16617 | 0.7 | 0.442262 |
Target: 5'- uGCAGgccgCGAUgGaGGCGGCGGGCAUc -3' miRNA: 3'- gCGUCa---GCUGgUgCUGCUGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 49321 | 0.7 | 0.461036 |
Target: 5'- uGCAcaaccucaccGUCcGCCACGGCGgcgccGCGGGCGCu -3' miRNA: 3'- gCGU----------CAGcUGGUGCUGC-----UGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 68716 | 0.69 | 0.509706 |
Target: 5'- aCGCAGU-GACCAUGAUcGCuGGCACc -3' miRNA: 3'- -GCGUCAgCUGGUGCUGcUGcCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 62057 | 0.69 | 0.509706 |
Target: 5'- aCGCAcaaGACCACGAUGACuGuGCGCGg -3' miRNA: 3'- -GCGUcagCUGGUGCUGCUGcC-CGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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