Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 7985 | 0.69 | 0.519703 |
Target: 5'- uCGgAGgCGGCgGCGGucucauCGACGGGCGCGg -3' miRNA: 3'- -GCgUCaGCUGgUGCU------GCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 9239 | 0.69 | 0.529777 |
Target: 5'- cCGCGaUCu-CCGCGGCGGuCGGGUACGa -3' miRNA: 3'- -GCGUcAGcuGGUGCUGCU-GCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 30566 | 0.69 | 0.529777 |
Target: 5'- aGCAGUCGGugcCCugGugGACguucguGGGCGa- -3' miRNA: 3'- gCGUCAGCU---GGugCugCUG------CCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 49589 | 0.69 | 0.529777 |
Target: 5'- gCGCAG--GACCcCGGCGACuGGGCAg- -3' miRNA: 3'- -GCGUCagCUGGuGCUGCUG-CCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 16357 | 0.69 | 0.539921 |
Target: 5'- gGCGGUgGGugGCGACGA-GGGCGCc -3' miRNA: 3'- gCGUCAgCUggUGCUGCUgCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 8809 | 0.68 | 0.55013 |
Target: 5'- -uCAG-CGACCGCGGCGGCGuuguuguGCGCAg -3' miRNA: 3'- gcGUCaGCUGGUGCUGCUGCc------CGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 14473 | 0.68 | 0.55013 |
Target: 5'- uGCGGUUcuCCGCGGCGaucauGCGGGCGgAg -3' miRNA: 3'- gCGUCAGcuGGUGCUGC-----UGCCCGUgU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 50391 | 0.68 | 0.55013 |
Target: 5'- cCGCuaccaCGACUACGGCGACuGGUACu -3' miRNA: 3'- -GCGuca--GCUGGUGCUGCUGcCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 69008 | 0.68 | 0.55013 |
Target: 5'- gGCGG-CGGCCGUGACGAUGGucaGCGCc -3' miRNA: 3'- gCGUCaGCUGGUGCUGCUGCC---CGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 29629 | 0.68 | 0.55013 |
Target: 5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3' miRNA: 3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 16689 | 0.68 | 0.560398 |
Target: 5'- uGCAgGUCGACCgGgGACGcCGGGgGCu -3' miRNA: 3'- gCGU-CAGCUGG-UgCUGCuGCCCgUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 69611 | 0.68 | 0.560398 |
Target: 5'- aGCAGU-GAgCAC-ACGGCGuGGCGCAc -3' miRNA: 3'- gCGUCAgCUgGUGcUGCUGC-CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 49642 | 0.68 | 0.560398 |
Target: 5'- cCGCGGgggaaGGCCAgGGCGAUGucGGCACc -3' miRNA: 3'- -GCGUCag---CUGGUgCUGCUGC--CCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 5293 | 0.68 | 0.560398 |
Target: 5'- gCGaCAGcUCGGCCA---UGGCGGGCGCGg -3' miRNA: 3'- -GC-GUC-AGCUGGUgcuGCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 17575 | 0.68 | 0.56865 |
Target: 5'- gGCAGUgacgccgCGGCCAagcgccgugguauCGGCGGCucGGGCGCGg -3' miRNA: 3'- gCGUCA-------GCUGGU-------------GCUGCUG--CCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 52993 | 0.68 | 0.570718 |
Target: 5'- gGCAggauuuggauuuGUCG-CCGCGGCu-CGGGCACGc -3' miRNA: 3'- gCGU------------CAGCuGGUGCUGcuGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 12645 | 0.68 | 0.581083 |
Target: 5'- aCGUGGgcuGACgGCGugGAUGGGgGCAc -3' miRNA: 3'- -GCGUCag-CUGgUGCugCUGCCCgUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 38217 | 0.68 | 0.590445 |
Target: 5'- gGCGGcCGAagacgucCCGCGGCGGCGccauaGGCACc -3' miRNA: 3'- gCGUCaGCU-------GGUGCUGCUGC-----CCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 8533 | 0.68 | 0.591487 |
Target: 5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3' miRNA: 3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 8950 | 0.68 | 0.591487 |
Target: 5'- aGCAGgCGGcCCugGACGAaguugaacagcuCGGGUGCGu -3' miRNA: 3'- gCGUCaGCU-GGugCUGCU------------GCCCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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