miRNA display CGI


Results 61 - 67 of 67 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 382 0.66 0.695892
Target:  5'- cCGCGGUCaaGACCugGGgcaaGGGCACc -3'
miRNA:   3'- -GCGUCAG--CUGGugCUgcugCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 17803 0.66 0.695892
Target:  5'- aCGCAGgcCGACaucaACG-CGGCGGccGCGCAa -3'
miRNA:   3'- -GCGUCa-GCUGg---UGCuGCUGCC--CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 74201 0.66 0.706177
Target:  5'- cCGCAGUaGGCCACGACGuugguucCGuGGaUACGg -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGCu------GC-CC-GUGU- -5'
18304 5' -57.8 NC_004681.1 + 25239 0.66 0.716397
Target:  5'- gGCGGccauggCGcCCGCGGCGGCGGuuggguGCGCu -3'
miRNA:   3'- gCGUCa-----GCuGGUGCUGCUGCC------CGUGu -5'
18304 5' -57.8 NC_004681.1 + 40042 0.66 0.716397
Target:  5'- gCGCGGaUCGACUuguCGuugaGGCGGGCGa- -3'
miRNA:   3'- -GCGUC-AGCUGGu--GCug--CUGCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 39634 0.66 0.716397
Target:  5'- aGCGGUCGAUC-UGACGcCGGGauuGCc -3'
miRNA:   3'- gCGUCAGCUGGuGCUGCuGCCCg--UGu -5'
18304 5' -57.8 NC_004681.1 + 13410 0.66 0.716397
Target:  5'- cCGUuGUCGGCCuCGAucuccaggcuCGACaGGGCGCc -3'
miRNA:   3'- -GCGuCAGCUGGuGCU----------GCUG-CCCGUGu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.