miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 23147 0.66 0.662651
Target:  5'- aGCcaGGUCGuuGCCuucaucaaacaGACGACGGGCAUc -3'
miRNA:   3'- gCG--UCAGC--UGGug---------CUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 48544 0.67 0.643816
Target:  5'- -aCGGUCGAgCGCGACGGCa-GCACc -3'
miRNA:   3'- gcGUCAGCUgGUGCUGCUGccCGUGu -5'
18304 5' -57.8 NC_004681.1 + 40216 0.67 0.622854
Target:  5'- gGCGGUcacCGACCugG-CGACccccgGGGUGCAg -3'
miRNA:   3'- gCGUCA---GCUGGugCuGCUG-----CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 24731 0.67 0.61238
Target:  5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3'
miRNA:   3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5'
18304 5' -57.8 NC_004681.1 + 54695 0.67 0.61238
Target:  5'- uGCcGUCGAuguCCACGAUGAUugcgGGGgGCAg -3'
miRNA:   3'- gCGuCAGCU---GGUGCUGCUG----CCCgUGU- -5'
18304 5' -57.8 NC_004681.1 + 61461 0.67 0.61238
Target:  5'- aGCuGUUGcccACCGCaGCGACGGGC-CGa -3'
miRNA:   3'- gCGuCAGC---UGGUGcUGCUGCCCGuGU- -5'
18304 5' -57.8 NC_004681.1 + 3403 0.68 0.591487
Target:  5'- cCGCAGUCcuuACCGuucaGGCGGGCGCGg -3'
miRNA:   3'- -GCGUCAGc--UGGUgcugCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8950 0.68 0.591487
Target:  5'- aGCAGgCGGcCCugGACGAaguugaacagcuCGGGUGCGu -3'
miRNA:   3'- gCGUCaGCU-GGugCUGCU------------GCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8533 0.68 0.591487
Target:  5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3'
miRNA:   3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 38217 0.68 0.590445
Target:  5'- gGCGGcCGAagacgucCCGCGGCGGCGccauaGGCACc -3'
miRNA:   3'- gCGUCaGCU-------GGUGCUGCUGC-----CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 12645 0.68 0.581083
Target:  5'- aCGUGGgcuGACgGCGugGAUGGGgGCAc -3'
miRNA:   3'- -GCGUCag-CUGgUGCugCUGCCCgUGU- -5'
18304 5' -57.8 NC_004681.1 + 52993 0.68 0.570718
Target:  5'- gGCAggauuuggauuuGUCG-CCGCGGCu-CGGGCACGc -3'
miRNA:   3'- gCGU------------CAGCuGGUGCUGcuGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 17575 0.68 0.56865
Target:  5'- gGCAGUgacgccgCGGCCAagcgccgugguauCGGCGGCucGGGCGCGg -3'
miRNA:   3'- gCGUCA-------GCUGGU-------------GCUGCUG--CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 16689 0.68 0.560398
Target:  5'- uGCAgGUCGACCgGgGACGcCGGGgGCu -3'
miRNA:   3'- gCGU-CAGCUGG-UgCUGCuGCCCgUGu -5'
18304 5' -57.8 NC_004681.1 + 49642 0.68 0.560398
Target:  5'- cCGCGGgggaaGGCCAgGGCGAUGucGGCACc -3'
miRNA:   3'- -GCGUCag---CUGGUgCUGCUGC--CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 69611 0.68 0.560398
Target:  5'- aGCAGU-GAgCAC-ACGGCGuGGCGCAc -3'
miRNA:   3'- gCGUCAgCUgGUGcUGCUGC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 5293 0.68 0.560398
Target:  5'- gCGaCAGcUCGGCCA---UGGCGGGCGCGg -3'
miRNA:   3'- -GC-GUC-AGCUGGUgcuGCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 29629 0.68 0.55013
Target:  5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3'
miRNA:   3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5'
18304 5' -57.8 NC_004681.1 + 50391 0.68 0.55013
Target:  5'- cCGCuaccaCGACUACGGCGACuGGUACu -3'
miRNA:   3'- -GCGuca--GCUGGUGCUGCUGcCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 69008 0.68 0.55013
Target:  5'- gGCGG-CGGCCGUGACGAUGGucaGCGCc -3'
miRNA:   3'- gCGUCaGCUGGUGCUGCUGCC---CGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.