miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 382 0.66 0.695892
Target:  5'- cCGCGGUCaaGACCugGGgcaaGGGCACc -3'
miRNA:   3'- -GCGUCAG--CUGGugCUgcugCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 518 0.72 0.355385
Target:  5'- gGCcaucuuccgCGGCCGCGAgucccucaaCGACGGGCACAa -3'
miRNA:   3'- gCGuca------GCUGGUGCU---------GCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 3403 0.68 0.591487
Target:  5'- cCGCAGUCcuuACCGuucaGGCGGGCGCGg -3'
miRNA:   3'- -GCGUCAGc--UGGUgcugCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 5293 0.68 0.560398
Target:  5'- gCGaCAGcUCGGCCA---UGGCGGGCGCGg -3'
miRNA:   3'- -GC-GUC-AGCUGGUgcuGCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 5668 0.66 0.675164
Target:  5'- uGCGcUUGAUgGCGACccguGACGGGUGCAu -3'
miRNA:   3'- gCGUcAGCUGgUGCUG----CUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 7142 0.66 0.664739
Target:  5'- cCGCGGUCGuucaugaaCGCGACGgagACGGuGCugAu -3'
miRNA:   3'- -GCGUCAGCug------GUGCUGC---UGCC-CGugU- -5'
18304 5' -57.8 NC_004681.1 + 7459 0.74 0.277208
Target:  5'- cCGCGGgcuuggcgggaggcuUCG-CCGCGGCGGCGGGguCAg -3'
miRNA:   3'- -GCGUC---------------AGCuGGUGCUGCUGCCCguGU- -5'
18304 5' -57.8 NC_004681.1 + 7985 0.69 0.519703
Target:  5'- uCGgAGgCGGCgGCGGucucauCGACGGGCGCGg -3'
miRNA:   3'- -GCgUCaGCUGgUGCU------GCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8533 0.68 0.591487
Target:  5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3'
miRNA:   3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 8809 0.68 0.55013
Target:  5'- -uCAG-CGACCGCGGCGGCGuuguuguGCGCAg -3'
miRNA:   3'- gcGUCaGCUGGUGCUGCUGCc------CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8950 0.68 0.591487
Target:  5'- aGCAGgCGGcCCugGACGAaguugaacagcuCGGGUGCGu -3'
miRNA:   3'- gCGUCaGCU-GGugCUGCU------------GCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 9239 0.69 0.529777
Target:  5'- cCGCGaUCu-CCGCGGCGGuCGGGUACGa -3'
miRNA:   3'- -GCGUcAGcuGGUGCUGCU-GCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 12645 0.68 0.581083
Target:  5'- aCGUGGgcuGACgGCGugGAUGGGgGCAc -3'
miRNA:   3'- -GCGUCag-CUGgUGCugCUGCCCgUGU- -5'
18304 5' -57.8 NC_004681.1 + 13410 0.66 0.716397
Target:  5'- cCGUuGUCGGCCuCGAucuccaggcuCGACaGGGCGCc -3'
miRNA:   3'- -GCGuCAGCUGGuGCU----------GCUG-CCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 13624 0.73 0.316682
Target:  5'- gGCGGagCGaACCACGGCGGgaGGGCACu -3'
miRNA:   3'- gCGUCa-GC-UGGUGCUGCUg-CCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 14473 0.68 0.55013
Target:  5'- uGCGGUUcuCCGCGGCGaucauGCGGGCGgAg -3'
miRNA:   3'- gCGUCAGcuGGUGCUGC-----UGCCCGUgU- -5'
18304 5' -57.8 NC_004681.1 + 15664 0.66 0.675164
Target:  5'- aCGCAGaCG-CCaACGGCGACGucgaGCACGc -3'
miRNA:   3'- -GCGUCaGCuGG-UGCUGCUGCc---CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 16357 0.69 0.539921
Target:  5'- gGCGGUgGGugGCGACGA-GGGCGCc -3'
miRNA:   3'- gCGUCAgCUggUGCUGCUgCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 16617 0.7 0.442262
Target:  5'- uGCAGgccgCGAUgGaGGCGGCGGGCAUc -3'
miRNA:   3'- gCGUCa---GCUGgUgCUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 16689 0.68 0.560398
Target:  5'- uGCAgGUCGACCgGgGACGcCGGGgGCu -3'
miRNA:   3'- gCGU-CAGCUGG-UgCUGCuGCCCgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.