miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 17575 0.68 0.56865
Target:  5'- gGCAGUgacgccgCGGCCAagcgccgugguauCGGCGGCucGGGCGCGg -3'
miRNA:   3'- gCGUCA-------GCUGGU-------------GCUGCUG--CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 17803 0.66 0.695892
Target:  5'- aCGCAGgcCGACaucaACG-CGGCGGccGCGCAa -3'
miRNA:   3'- -GCGUCa-GCUGg---UGCuGCUGCC--CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 19367 0.79 0.127612
Target:  5'- --gGGUCGACCACaccggccugGGCGACGGGUACAu -3'
miRNA:   3'- gcgUCAGCUGGUG---------CUGCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 19619 0.74 0.28807
Target:  5'- gCGUGGUCGAUgACGGCGAgggUGGGCAa- -3'
miRNA:   3'- -GCGUCAGCUGgUGCUGCU---GCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 20019 0.66 0.685551
Target:  5'- gCGCuGUCGaACCGCGGagaccagGACGGGUg-- -3'
miRNA:   3'- -GCGuCAGC-UGGUGCUg------CUGCCCGugu -5'
18304 5' -57.8 NC_004681.1 + 21335 0.75 0.218265
Target:  5'- aCGUGGUCGACCGCaGCGGCGucacggguccuaccGGCACGu -3'
miRNA:   3'- -GCGUCAGCUGGUGcUGCUGC--------------CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 21424 0.75 0.249024
Target:  5'- uGCGGUCGACCACGuccACGACGauGGuCGCc -3'
miRNA:   3'- gCGUCAGCUGGUGC---UGCUGC--CC-GUGu -5'
18304 5' -57.8 NC_004681.1 + 23147 0.66 0.662651
Target:  5'- aGCcaGGUCGuuGCCuucaucaaacaGACGACGGGCAUc -3'
miRNA:   3'- gCG--UCAGC--UGGug---------CUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 23567 0.66 0.695892
Target:  5'- gGCAcaguguucGUCaGCCACGAgGGCuacgaGGGCACGg -3'
miRNA:   3'- gCGU--------CAGcUGGUGCUgCUG-----CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 24731 0.67 0.61238
Target:  5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3'
miRNA:   3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5'
18304 5' -57.8 NC_004681.1 + 24821 0.71 0.380157
Target:  5'- cCGguGUCGACUGCGAugcCGACccauGGCACGu -3'
miRNA:   3'- -GCguCAGCUGGUGCU---GCUGc---CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 24824 0.78 0.15351
Target:  5'- aCGCGGUCGACCucaucggcgucgGCGGCG-CGGGCGg- -3'
miRNA:   3'- -GCGUCAGCUGG------------UGCUGCuGCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 24920 0.7 0.433039
Target:  5'- aCGCcgaugaGGUCGACCGCGuuGgcccauGCGGGCAUg -3'
miRNA:   3'- -GCG------UCAGCUGGUGCugC------UGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 25239 0.66 0.716397
Target:  5'- gGCGGccauggCGcCCGCGGCGGCGGuuggguGCGCu -3'
miRNA:   3'- gCGUCa-----GCuGGUGCUGCUGCC------CGUGu -5'
18304 5' -57.8 NC_004681.1 + 29629 0.68 0.55013
Target:  5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3'
miRNA:   3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5'
18304 5' -57.8 NC_004681.1 + 30566 0.69 0.529777
Target:  5'- aGCAGUCGGugcCCugGugGACguucguGGGCGa- -3'
miRNA:   3'- gCGUCAGCU---GGugCugCUG------CCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 34021 0.71 0.423928
Target:  5'- uCGUGGUCGACUGCGGaGACGaGGC-CAg -3'
miRNA:   3'- -GCGUCAGCUGGUGCUgCUGC-CCGuGU- -5'
18304 5' -57.8 NC_004681.1 + 34111 1.08 0.001138
Target:  5'- cCGCAGUCGACCACGACGACGGGCACAc -3'
miRNA:   3'- -GCGUCAGCUGGUGCUGCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 38217 0.68 0.590445
Target:  5'- gGCGGcCGAagacgucCCGCGGCGGCGccauaGGCACc -3'
miRNA:   3'- gCGUCaGCU-------GGUGCUGCUGC-----CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 39308 0.66 0.695892
Target:  5'- uGaCAGUCGACCAggcugacguccuCGACGucgaGGGCgaGCAu -3'
miRNA:   3'- gC-GUCAGCUGGU------------GCUGCug--CCCG--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.