miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 74393 0.66 0.695892
Target:  5'- aCGguGagGACUACGugGACagccuccguGaGGCACAc -3'
miRNA:   3'- -GCguCagCUGGUGCugCUG---------C-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 74201 0.66 0.706177
Target:  5'- cCGCAGUaGGCCACGACGuugguucCGuGGaUACGg -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGCu------GC-CC-GUGU- -5'
18304 5' -57.8 NC_004681.1 + 72243 0.71 0.423928
Target:  5'- gGCGGUUGAuggacuCCACGAUGGCGcGGUAUu -3'
miRNA:   3'- gCGUCAGCU------GGUGCUGCUGC-CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 69611 0.68 0.560398
Target:  5'- aGCAGU-GAgCAC-ACGGCGuGGCGCAc -3'
miRNA:   3'- gCGUCAgCUgGUGcUGCUGC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 69008 0.68 0.55013
Target:  5'- gGCGG-CGGCCGUGACGAUGGucaGCGCc -3'
miRNA:   3'- gCGUCaGCUGGUGCUGCUGCC---CGUGu -5'
18304 5' -57.8 NC_004681.1 + 68716 0.69 0.509706
Target:  5'- aCGCAGU-GACCAUGAUcGCuGGCACc -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGcUGcCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 63805 0.71 0.406057
Target:  5'- uGCAauuGUgCGACCAUGACGAgucCGcGGCGCAc -3'
miRNA:   3'- gCGU---CA-GCUGGUGCUGCU---GC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 62057 0.69 0.509706
Target:  5'- aCGCAcaaGACCACGAUGACuGuGCGCGg -3'
miRNA:   3'- -GCGUcagCUGGUGCUGCUGcC-CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 61766 0.71 0.405176
Target:  5'- gGCGG-CGGCCuccGCGGCGGCGGcuucugcGCGCAg -3'
miRNA:   3'- gCGUCaGCUGG---UGCUGCUGCC-------CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 61461 0.67 0.61238
Target:  5'- aGCuGUUGcccACCGCaGCGACGGGC-CGa -3'
miRNA:   3'- gCGuCAGC---UGGUGcUGCUGCCCGuGU- -5'
18304 5' -57.8 NC_004681.1 + 59623 0.66 0.675164
Target:  5'- -cCGGUCGAUaaggucaACGACGugGaGGUGCAg -3'
miRNA:   3'- gcGUCAGCUGg------UGCUGCugC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 54695 0.67 0.61238
Target:  5'- uGCcGUCGAuguCCACGAUGAUugcgGGGgGCAg -3'
miRNA:   3'- gCGuCAGCU---GGUGCUGCUG----CCCgUGU- -5'
18304 5' -57.8 NC_004681.1 + 52993 0.68 0.570718
Target:  5'- gGCAggauuuggauuuGUCG-CCGCGGCu-CGGGCACGc -3'
miRNA:   3'- gCGU------------CAGCuGGUGCUGcuGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 52854 0.66 0.675164
Target:  5'- cCGCcaGGUCGACCAUGcagcGCGugaagacCGGGCAg- -3'
miRNA:   3'- -GCG--UCAGCUGGUGC----UGCu------GCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 50391 0.68 0.55013
Target:  5'- cCGCuaccaCGACUACGGCGACuGGUACu -3'
miRNA:   3'- -GCGuca--GCUGGUGCUGCUGcCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 50391 0.7 0.433039
Target:  5'- aGC-GUCGGCCGCGGgGACGuGGCc-- -3'
miRNA:   3'- gCGuCAGCUGGUGCUgCUGC-CCGugu -5'
18304 5' -57.8 NC_004681.1 + 50150 0.66 0.685551
Target:  5'- gGCAGUCGAUgGCGuCGGagacguagcCGaGGCGCu -3'
miRNA:   3'- gCGUCAGCUGgUGCuGCU---------GC-CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 49642 0.68 0.560398
Target:  5'- cCGCGGgggaaGGCCAgGGCGAUGucGGCACc -3'
miRNA:   3'- -GCGUCag---CUGGUgCUGCUGC--CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 49589 0.69 0.529777
Target:  5'- gCGCAG--GACCcCGGCGACuGGGCAg- -3'
miRNA:   3'- -GCGUCagCUGGuGCUGCUG-CCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 49321 0.7 0.461036
Target:  5'- uGCAcaaccucaccGUCcGCCACGGCGgcgccGCGGGCGCu -3'
miRNA:   3'- gCGU----------CAGcUGGUGCUGC-----UGCCCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.