Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 48544 | 0.67 | 0.643816 |
Target: 5'- -aCGGUCGAgCGCGACGGCa-GCACc -3' miRNA: 3'- gcGUCAGCUgGUGCUGCUGccCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 47487 | 0.66 | 0.664739 |
Target: 5'- uCGCAG--GACCGCGuCGcCGuGGCGCGu -3' miRNA: 3'- -GCGUCagCUGGUGCuGCuGC-CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 47372 | 0.66 | 0.685551 |
Target: 5'- -uUAGUCGcccgccaacgcGCCACGGCGACGcGGUccuGCGa -3' miRNA: 3'- gcGUCAGC-----------UGGUGCUGCUGC-CCG---UGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 43799 | 0.66 | 0.675164 |
Target: 5'- gGCGGUguACUGCGGCGGCGGGg--- -3' miRNA: 3'- gCGUCAgcUGGUGCUGCUGCCCgugu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 40216 | 0.67 | 0.622854 |
Target: 5'- gGCGGUcacCGACCugG-CGACccccgGGGUGCAg -3' miRNA: 3'- gCGUCA---GCUGGugCuGCUG-----CCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 40042 | 0.66 | 0.716397 |
Target: 5'- gCGCGGaUCGACUuguCGuugaGGCGGGCGa- -3' miRNA: 3'- -GCGUC-AGCUGGu--GCug--CUGCCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 39634 | 0.66 | 0.716397 |
Target: 5'- aGCGGUCGAUC-UGACGcCGGGauuGCc -3' miRNA: 3'- gCGUCAGCUGGuGCUGCuGCCCg--UGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 39308 | 0.66 | 0.695892 |
Target: 5'- uGaCAGUCGACCAggcugacguccuCGACGucgaGGGCgaGCAu -3' miRNA: 3'- gC-GUCAGCUGGU------------GCUGCug--CCCG--UGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 38217 | 0.68 | 0.590445 |
Target: 5'- gGCGGcCGAagacgucCCGCGGCGGCGccauaGGCACc -3' miRNA: 3'- gCGUCaGCU-------GGUGCUGCUGC-----CCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 34111 | 1.08 | 0.001138 |
Target: 5'- cCGCAGUCGACCACGACGACGGGCACAc -3' miRNA: 3'- -GCGUCAGCUGGUGCUGCUGCCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 34021 | 0.71 | 0.423928 |
Target: 5'- uCGUGGUCGACUGCGGaGACGaGGC-CAg -3' miRNA: 3'- -GCGUCAGCUGGUGCUgCUGC-CCGuGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 30566 | 0.69 | 0.529777 |
Target: 5'- aGCAGUCGGugcCCugGugGACguucguGGGCGa- -3' miRNA: 3'- gCGUCAGCU---GGugCugCUG------CCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 29629 | 0.68 | 0.55013 |
Target: 5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3' miRNA: 3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 25239 | 0.66 | 0.716397 |
Target: 5'- gGCGGccauggCGcCCGCGGCGGCGGuuggguGCGCu -3' miRNA: 3'- gCGUCa-----GCuGGUGCUGCUGCC------CGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24920 | 0.7 | 0.433039 |
Target: 5'- aCGCcgaugaGGUCGACCGCGuuGgcccauGCGGGCAUg -3' miRNA: 3'- -GCG------UCAGCUGGUGCugC------UGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24824 | 0.78 | 0.15351 |
Target: 5'- aCGCGGUCGACCucaucggcgucgGCGGCG-CGGGCGg- -3' miRNA: 3'- -GCGUCAGCUGG------------UGCUGCuGCCCGUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24821 | 0.71 | 0.380157 |
Target: 5'- cCGguGUCGACUGCGAugcCGACccauGGCACGu -3' miRNA: 3'- -GCguCAGCUGGUGCU---GCUGc---CCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24731 | 0.67 | 0.61238 |
Target: 5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3' miRNA: 3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 23567 | 0.66 | 0.695892 |
Target: 5'- gGCAcaguguucGUCaGCCACGAgGGCuacgaGGGCACGg -3' miRNA: 3'- gCGU--------CAGcUGGUGCUgCUG-----CCCGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 23147 | 0.66 | 0.662651 |
Target: 5'- aGCcaGGUCGuuGCCuucaucaaacaGACGACGGGCAUc -3' miRNA: 3'- gCG--UCAGC--UGGug---------CUGCUGCCCGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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