miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 21424 0.75 0.249024
Target:  5'- uGCGGUCGACCACGuccACGACGauGGuCGCc -3'
miRNA:   3'- gCGUCAGCUGGUGC---UGCUGC--CC-GUGu -5'
18304 5' -57.8 NC_004681.1 + 21335 0.75 0.218265
Target:  5'- aCGUGGUCGACCGCaGCGGCGucacggguccuaccGGCACGu -3'
miRNA:   3'- -GCGUCAGCUGGUGcUGCUGC--------------CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 20019 0.66 0.685551
Target:  5'- gCGCuGUCGaACCGCGGagaccagGACGGGUg-- -3'
miRNA:   3'- -GCGuCAGC-UGGUGCUg------CUGCCCGugu -5'
18304 5' -57.8 NC_004681.1 + 19619 0.74 0.28807
Target:  5'- gCGUGGUCGAUgACGGCGAgggUGGGCAa- -3'
miRNA:   3'- -GCGUCAGCUGgUGCUGCU---GCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 19367 0.79 0.127612
Target:  5'- --gGGUCGACCACaccggccugGGCGACGGGUACAu -3'
miRNA:   3'- gcgUCAGCUGGUG---------CUGCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 17803 0.66 0.695892
Target:  5'- aCGCAGgcCGACaucaACG-CGGCGGccGCGCAa -3'
miRNA:   3'- -GCGUCa-GCUGg---UGCuGCUGCC--CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 17575 0.68 0.56865
Target:  5'- gGCAGUgacgccgCGGCCAagcgccgugguauCGGCGGCucGGGCGCGg -3'
miRNA:   3'- gCGUCA-------GCUGGU-------------GCUGCUG--CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 16689 0.68 0.560398
Target:  5'- uGCAgGUCGACCgGgGACGcCGGGgGCu -3'
miRNA:   3'- gCGU-CAGCUGG-UgCUGCuGCCCgUGu -5'
18304 5' -57.8 NC_004681.1 + 16617 0.7 0.442262
Target:  5'- uGCAGgccgCGAUgGaGGCGGCGGGCAUc -3'
miRNA:   3'- gCGUCa---GCUGgUgCUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 16357 0.69 0.539921
Target:  5'- gGCGGUgGGugGCGACGA-GGGCGCc -3'
miRNA:   3'- gCGUCAgCUggUGCUGCUgCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 15664 0.66 0.675164
Target:  5'- aCGCAGaCG-CCaACGGCGACGucgaGCACGc -3'
miRNA:   3'- -GCGUCaGCuGG-UGCUGCUGCc---CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 14473 0.68 0.55013
Target:  5'- uGCGGUUcuCCGCGGCGaucauGCGGGCGgAg -3'
miRNA:   3'- gCGUCAGcuGGUGCUGC-----UGCCCGUgU- -5'
18304 5' -57.8 NC_004681.1 + 13624 0.73 0.316682
Target:  5'- gGCGGagCGaACCACGGCGGgaGGGCACu -3'
miRNA:   3'- gCGUCa-GC-UGGUGCUGCUg-CCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 13410 0.66 0.716397
Target:  5'- cCGUuGUCGGCCuCGAucuccaggcuCGACaGGGCGCc -3'
miRNA:   3'- -GCGuCAGCUGGuGCU----------GCUG-CCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 12645 0.68 0.581083
Target:  5'- aCGUGGgcuGACgGCGugGAUGGGgGCAc -3'
miRNA:   3'- -GCGUCag-CUGgUGCugCUGCCCgUGU- -5'
18304 5' -57.8 NC_004681.1 + 9239 0.69 0.529777
Target:  5'- cCGCGaUCu-CCGCGGCGGuCGGGUACGa -3'
miRNA:   3'- -GCGUcAGcuGGUGCUGCU-GCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8950 0.68 0.591487
Target:  5'- aGCAGgCGGcCCugGACGAaguugaacagcuCGGGUGCGu -3'
miRNA:   3'- gCGUCaGCU-GGugCUGCU------------GCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8809 0.68 0.55013
Target:  5'- -uCAG-CGACCGCGGCGGCGuuguuguGCGCAg -3'
miRNA:   3'- gcGUCaGCUGGUGCUGCUGCc------CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 8533 0.68 0.591487
Target:  5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3'
miRNA:   3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 7985 0.69 0.519703
Target:  5'- uCGgAGgCGGCgGCGGucucauCGACGGGCGCGg -3'
miRNA:   3'- -GCgUCaGCUGgUGCU------GCUGCCCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.