Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18304 | 5' | -57.8 | NC_004681.1 | + | 7459 | 0.74 | 0.277208 |
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Target: 5'- cCGCGGgcuuggcgggaggcuUCG-CCGCGGCGGCGGGguCAg -3' miRNA: 3'- -GCGUC---------------AGCuGGUGCUGCUGCCCguGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 7142 | 0.66 | 0.664739 |
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Target: 5'- cCGCGGUCGuucaugaaCGCGACGgagACGGuGCugAu -3' miRNA: 3'- -GCGUCAGCug------GUGCUGC---UGCC-CGugU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 5668 | 0.66 | 0.675164 |
|
Target: 5'- uGCGcUUGAUgGCGACccguGACGGGUGCAu -3' miRNA: 3'- gCGUcAGCUGgUGCUG----CUGCCCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 5293 | 0.68 | 0.560398 |
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Target: 5'- gCGaCAGcUCGGCCA---UGGCGGGCGCGg -3' miRNA: 3'- -GC-GUC-AGCUGGUgcuGCUGCCCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 3403 | 0.68 | 0.591487 |
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Target: 5'- cCGCAGUCcuuACCGuucaGGCGGGCGCGg -3' miRNA: 3'- -GCGUCAGc--UGGUgcugCUGCCCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 518 | 0.72 | 0.355385 |
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Target: 5'- gGCcaucuuccgCGGCCGCGAgucccucaaCGACGGGCACAa -3' miRNA: 3'- gCGuca------GCUGGUGCU---------GCUGCCCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 382 | 0.66 | 0.695892 |
|
Target: 5'- cCGCGGUCaaGACCugGGgcaaGGGCACc -3' miRNA: 3'- -GCGUCAG--CUGGugCUgcugCCCGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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