miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 23147 0.66 0.662651
Target:  5'- aGCcaGGUCGuuGCCuucaucaaacaGACGACGGGCAUc -3'
miRNA:   3'- gCG--UCAGC--UGGug---------CUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 29629 0.68 0.55013
Target:  5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3'
miRNA:   3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5'
18304 5' -57.8 NC_004681.1 + 50391 0.68 0.55013
Target:  5'- cCGCuaccaCGACUACGGCGACuGGUACu -3'
miRNA:   3'- -GCGuca--GCUGGUGCUGCUGcCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 17575 0.68 0.56865
Target:  5'- gGCAGUgacgccgCGGCCAagcgccgugguauCGGCGGCucGGGCGCGg -3'
miRNA:   3'- gCGUCA-------GCUGGU-------------GCUGCUG--CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 12645 0.68 0.581083
Target:  5'- aCGUGGgcuGACgGCGugGAUGGGgGCAc -3'
miRNA:   3'- -GCGUCag-CUGgUGCugCUGCCCgUGU- -5'
18304 5' -57.8 NC_004681.1 + 38217 0.68 0.590445
Target:  5'- gGCGGcCGAagacgucCCGCGGCGGCGccauaGGCACc -3'
miRNA:   3'- gCGUCaGCU-------GGUGCUGCUGC-----CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 8533 0.68 0.591487
Target:  5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3'
miRNA:   3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 24731 0.67 0.61238
Target:  5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3'
miRNA:   3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5'
18304 5' -57.8 NC_004681.1 + 48544 0.67 0.643816
Target:  5'- -aCGGUCGAgCGCGACGGCa-GCACc -3'
miRNA:   3'- gcGUCAGCUgGUGCUGCUGccCGUGu -5'
18304 5' -57.8 NC_004681.1 + 16357 0.69 0.539921
Target:  5'- gGCGGUgGGugGCGACGA-GGGCGCc -3'
miRNA:   3'- gCGUCAgCUggUGCUGCUgCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 68716 0.69 0.509706
Target:  5'- aCGCAGU-GACCAUGAUcGCuGGCACc -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGcUGcCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 62057 0.69 0.509706
Target:  5'- aCGCAcaaGACCACGAUGACuGuGCGCGg -3'
miRNA:   3'- -GCGUcagCUGGUGCUGCUGcC-CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 24824 0.78 0.15351
Target:  5'- aCGCGGUCGACCucaucggcgucgGCGGCG-CGGGCGg- -3'
miRNA:   3'- -GCGUCAGCUGG------------UGCUGCuGCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 21335 0.75 0.218265
Target:  5'- aCGUGGUCGACCGCaGCGGCGucacggguccuaccGGCACGu -3'
miRNA:   3'- -GCGUCAGCUGGUGcUGCUGC--------------CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 19619 0.74 0.28807
Target:  5'- gCGUGGUCGAUgACGGCGAgggUGGGCAa- -3'
miRNA:   3'- -GCGUCAGCUGgUGCUGCU---GCCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 518 0.72 0.355385
Target:  5'- gGCcaucuuccgCGGCCGCGAgucccucaaCGACGGGCACAa -3'
miRNA:   3'- gCGuca------GCUGGUGCU---------GCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 34021 0.71 0.423928
Target:  5'- uCGUGGUCGACUGCGGaGACGaGGC-CAg -3'
miRNA:   3'- -GCGUCAGCUGGUGCUgCUGC-CCGuGU- -5'
18304 5' -57.8 NC_004681.1 + 72243 0.71 0.423928
Target:  5'- gGCGGUUGAuggacuCCACGAUGGCGcGGUAUu -3'
miRNA:   3'- gCGUCAGCU------GGUGCUGCUGC-CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 16617 0.7 0.442262
Target:  5'- uGCAGgccgCGAUgGaGGCGGCGGGCAUc -3'
miRNA:   3'- gCGUCa---GCUGgUgCUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 49321 0.7 0.461036
Target:  5'- uGCAcaaccucaccGUCcGCCACGGCGgcgccGCGGGCGCu -3'
miRNA:   3'- gCGU----------CAGcUGGUGCUGC-----UGCCCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.