miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 518 0.72 0.355385
Target:  5'- gGCcaucuuccgCGGCCGCGAgucccucaaCGACGGGCACAa -3'
miRNA:   3'- gCGuca------GCUGGUGCU---------GCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 34021 0.71 0.423928
Target:  5'- uCGUGGUCGACUGCGGaGACGaGGC-CAg -3'
miRNA:   3'- -GCGUCAGCUGGUGCUgCUGC-CCGuGU- -5'
18304 5' -57.8 NC_004681.1 + 72243 0.71 0.423928
Target:  5'- gGCGGUUGAuggacuCCACGAUGGCGcGGUAUu -3'
miRNA:   3'- gCGUCAGCU------GGUGCUGCUGC-CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 16617 0.7 0.442262
Target:  5'- uGCAGgccgCGAUgGaGGCGGCGGGCAUc -3'
miRNA:   3'- gCGUCa---GCUGgUgCUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 29629 0.68 0.55013
Target:  5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3'
miRNA:   3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5'
18304 5' -57.8 NC_004681.1 + 16357 0.69 0.539921
Target:  5'- gGCGGUgGGugGCGACGA-GGGCGCc -3'
miRNA:   3'- gCGUCAgCUggUGCUGCUgCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 68716 0.69 0.509706
Target:  5'- aCGCAGU-GACCAUGAUcGCuGGCACc -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGcUGcCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 62057 0.69 0.509706
Target:  5'- aCGCAcaaGACCACGAUGACuGuGCGCGg -3'
miRNA:   3'- -GCGUcagCUGGUGCUGCUGcC-CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 49321 0.7 0.461036
Target:  5'- uGCAcaaccucaccGUCcGCCACGGCGgcgccGCGGGCGCu -3'
miRNA:   3'- gCGU----------CAGcUGGUGCUGC-----UGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 49589 0.69 0.529777
Target:  5'- gCGCAG--GACCcCGGCGACuGGGCAg- -3'
miRNA:   3'- -GCGUCagCUGGuGCUGCUG-CCCGUgu -5'
18304 5' -57.8 NC_004681.1 + 7985 0.69 0.519703
Target:  5'- uCGgAGgCGGCgGCGGucucauCGACGGGCGCGg -3'
miRNA:   3'- -GCgUCaGCUGgUGCU------GCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 24920 0.7 0.433039
Target:  5'- aCGCcgaugaGGUCGACCGCGuuGgcccauGCGGGCAUg -3'
miRNA:   3'- -GCG------UCAGCUGGUGCugC------UGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 50391 0.7 0.433039
Target:  5'- aGC-GUCGGCCGCGGgGACGuGGCc-- -3'
miRNA:   3'- gCGuCAGCUGGUGCUgCUGC-CCGugu -5'
18304 5' -57.8 NC_004681.1 + 63805 0.71 0.406057
Target:  5'- uGCAauuGUgCGACCAUGACGAgucCGcGGCGCAc -3'
miRNA:   3'- gCGU---CA-GCUGGUGCUGCU---GC-CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 61766 0.71 0.405176
Target:  5'- gGCGG-CGGCCuccGCGGCGGCGGcuucugcGCGCAg -3'
miRNA:   3'- gCGUCaGCUGG---UGCUGCUGCC-------CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 24821 0.71 0.380157
Target:  5'- cCGguGUCGACUGCGAugcCGACccauGGCACGu -3'
miRNA:   3'- -GCguCAGCUGGUGCU---GCUGc---CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 13624 0.73 0.316682
Target:  5'- gGCGGagCGaACCACGGCGGgaGGGCACu -3'
miRNA:   3'- gCGUCa-GC-UGGUGCUGCUg-CCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 7459 0.74 0.277208
Target:  5'- cCGCGGgcuuggcgggaggcuUCG-CCGCGGCGGCGGGguCAg -3'
miRNA:   3'- -GCGUC---------------AGCuGGUGCUGCUGCCCguGU- -5'
18304 5' -57.8 NC_004681.1 + 21424 0.75 0.249024
Target:  5'- uGCGGUCGACCACGuccACGACGauGGuCGCc -3'
miRNA:   3'- gCGUCAGCUGGUGC---UGCUGC--CC-GUGu -5'
18304 5' -57.8 NC_004681.1 + 13410 0.66 0.716397
Target:  5'- cCGUuGUCGGCCuCGAucuccaggcuCGACaGGGCGCc -3'
miRNA:   3'- -GCGuCAGCUGGuGCU----------GCUG-CCCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.