Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18304 | 5' | -57.8 | NC_004681.1 | + | 9239 | 0.69 | 0.529777 |
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Target: 5'- cCGCGaUCu-CCGCGGCGGuCGGGUACGa -3' miRNA: 3'- -GCGUcAGcuGGUGCUGCU-GCCCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 8809 | 0.68 | 0.55013 |
|
Target: 5'- -uCAG-CGACCGCGGCGGCGuuguuguGCGCAg -3' miRNA: 3'- gcGUCaGCUGGUGCUGCUGCc------CGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 14473 | 0.68 | 0.55013 |
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Target: 5'- uGCGGUUcuCCGCGGCGaucauGCGGGCGgAg -3' miRNA: 3'- gCGUCAGcuGGUGCUGC-----UGCCCGUgU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 69008 | 0.68 | 0.55013 |
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Target: 5'- gGCGG-CGGCCGUGACGAUGGucaGCGCc -3' miRNA: 3'- gCGUCaGCUGGUGCUGCUGCC---CGUGu -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 5293 | 0.68 | 0.560398 |
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Target: 5'- gCGaCAGcUCGGCCA---UGGCGGGCGCGg -3' miRNA: 3'- -GC-GUC-AGCUGGUgcuGCUGCCCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 69611 | 0.68 | 0.560398 |
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Target: 5'- aGCAGU-GAgCAC-ACGGCGuGGCGCAc -3' miRNA: 3'- gCGUCAgCUgGUGcUGCUGC-CCGUGU- -5' |
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| 18304 | 5' | -57.8 | NC_004681.1 | + | 34111 | 1.08 | 0.001138 |
|
Target: 5'- cCGCAGUCGACCACGACGACGGGCACAc -3' miRNA: 3'- -GCGUCAGCUGGUGCUGCUGCCCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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