miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18304 5' -57.8 NC_004681.1 + 49321 0.7 0.461036
Target:  5'- uGCAcaaccucaccGUCcGCCACGGCGgcgccGCGGGCGCu -3'
miRNA:   3'- gCGU----------CAGcUGGUGCUGC-----UGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 17803 0.66 0.695892
Target:  5'- aCGCAGgcCGACaucaACG-CGGCGGccGCGCAa -3'
miRNA:   3'- -GCGUCa-GCUGg---UGCuGCUGCC--CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 72243 0.71 0.423928
Target:  5'- gGCGGUUGAuggacuCCACGAUGGCGcGGUAUu -3'
miRNA:   3'- gCGUCAGCU------GGUGCUGCUGC-CCGUGu -5'
18304 5' -57.8 NC_004681.1 + 34021 0.71 0.423928
Target:  5'- uCGUGGUCGACUGCGGaGACGaGGC-CAg -3'
miRNA:   3'- -GCGUCAGCUGGUGCUgCUGC-CCGuGU- -5'
18304 5' -57.8 NC_004681.1 + 518 0.72 0.355385
Target:  5'- gGCcaucuuccgCGGCCGCGAgucccucaaCGACGGGCACAa -3'
miRNA:   3'- gCGuca------GCUGGUGCU---------GCUGCCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 74201 0.66 0.706177
Target:  5'- cCGCAGUaGGCCACGACGuugguucCGuGGaUACGg -3'
miRNA:   3'- -GCGUCAgCUGGUGCUGCu------GC-CC-GUGU- -5'
18304 5' -57.8 NC_004681.1 + 21335 0.75 0.218265
Target:  5'- aCGUGGUCGACCGCaGCGGCGucacggguccuaccGGCACGu -3'
miRNA:   3'- -GCGUCAGCUGGUGcUGCUGC--------------CCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 25239 0.66 0.716397
Target:  5'- gGCGGccauggCGcCCGCGGCGGCGGuuggguGCGCu -3'
miRNA:   3'- gCGUCa-----GCuGGUGCUGCUGCC------CGUGu -5'
18304 5' -57.8 NC_004681.1 + 16357 0.69 0.539921
Target:  5'- gGCGGUgGGugGCGACGA-GGGCGCc -3'
miRNA:   3'- gCGUCAgCUggUGCUGCUgCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 29629 0.68 0.55013
Target:  5'- gGCucgacGUCGACCACGAcCGAUGGcaaCACGc -3'
miRNA:   3'- gCGu----CAGCUGGUGCU-GCUGCCc--GUGU- -5'
18304 5' -57.8 NC_004681.1 + 47372 0.66 0.685551
Target:  5'- -uUAGUCGcccgccaacgcGCCACGGCGACGcGGUccuGCGa -3'
miRNA:   3'- gcGUCAGC-----------UGGUGCUGCUGC-CCG---UGU- -5'
18304 5' -57.8 NC_004681.1 + 15664 0.66 0.675164
Target:  5'- aCGCAGaCG-CCaACGGCGACGucgaGCACGc -3'
miRNA:   3'- -GCGUCaGCuGG-UGCUGCUGCc---CGUGU- -5'
18304 5' -57.8 NC_004681.1 + 23147 0.66 0.662651
Target:  5'- aGCcaGGUCGuuGCCuucaucaaacaGACGACGGGCAUc -3'
miRNA:   3'- gCG--UCAGC--UGGug---------CUGCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 48544 0.67 0.643816
Target:  5'- -aCGGUCGAgCGCGACGGCa-GCACc -3'
miRNA:   3'- gcGUCAGCUgGUGCUGCUGccCGUGu -5'
18304 5' -57.8 NC_004681.1 + 24731 0.67 0.61238
Target:  5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3'
miRNA:   3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5'
18304 5' -57.8 NC_004681.1 + 8533 0.68 0.591487
Target:  5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3'
miRNA:   3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 23567 0.66 0.695892
Target:  5'- gGCAcaguguucGUCaGCCACGAgGGCuacgaGGGCACGg -3'
miRNA:   3'- gCGU--------CAGcUGGUGCUgCUG-----CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 382 0.66 0.695892
Target:  5'- cCGCGGUCaaGACCugGGgcaaGGGCACc -3'
miRNA:   3'- -GCGUCAG--CUGGugCUgcugCCCGUGu -5'
18304 5' -57.8 NC_004681.1 + 17575 0.68 0.56865
Target:  5'- gGCAGUgacgccgCGGCCAagcgccgugguauCGGCGGCucGGGCGCGg -3'
miRNA:   3'- gCGUCA-------GCUGGU-------------GCUGCUG--CCCGUGU- -5'
18304 5' -57.8 NC_004681.1 + 50391 0.68 0.55013
Target:  5'- cCGCuaccaCGACUACGGCGACuGGUACu -3'
miRNA:   3'- -GCGuca--GCUGGUGCUGCUGcCCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.