Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18304 | 5' | -57.8 | NC_004681.1 | + | 15664 | 0.66 | 0.675164 |
Target: 5'- aCGCAGaCG-CCaACGGCGACGucgaGCACGc -3' miRNA: 3'- -GCGUCaGCuGG-UGCUGCUGCc---CGUGU- -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 23147 | 0.66 | 0.662651 |
Target: 5'- aGCcaGGUCGuuGCCuucaucaaacaGACGACGGGCAUc -3' miRNA: 3'- gCG--UCAGC--UGGug---------CUGCUGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 48544 | 0.67 | 0.643816 |
Target: 5'- -aCGGUCGAgCGCGACGGCa-GCACc -3' miRNA: 3'- gcGUCAGCUgGUGCUGCUGccCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 24731 | 0.67 | 0.61238 |
Target: 5'- uCGCAGUCGACaC-CGGCaACGGGgGa- -3' miRNA: 3'- -GCGUCAGCUG-GuGCUGcUGCCCgUgu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 8533 | 0.68 | 0.591487 |
Target: 5'- cCGCGGccaUCGGCCAgaaccccuuCGGuuCGACGGGUACc -3' miRNA: 3'- -GCGUC---AGCUGGU---------GCU--GCUGCCCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 38217 | 0.68 | 0.590445 |
Target: 5'- gGCGGcCGAagacgucCCGCGGCGGCGccauaGGCACc -3' miRNA: 3'- gCGUCaGCU-------GGUGCUGCUGC-----CCGUGu -5' |
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18304 | 5' | -57.8 | NC_004681.1 | + | 19367 | 0.79 | 0.127612 |
Target: 5'- --gGGUCGACCACaccggccugGGCGACGGGUACAu -3' miRNA: 3'- gcgUCAGCUGGUG---------CUGCUGCCCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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