miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18305 3' -57.8 NC_004681.1 + 64793 0.66 0.674547
Target:  5'- -uCGUcUCGCCCcacGaGCUGCAUCCCg -3'
miRNA:   3'- uuGCAcAGUGGGuucC-CGGCGUAGGG- -5'
18305 3' -57.8 NC_004681.1 + 22395 0.67 0.568431
Target:  5'- gGACGcugGUCACCCc--GGCCGCGgacggcaaCCCu -3'
miRNA:   3'- -UUGCa--CAGUGGGuucCCGGCGUa-------GGG- -5'
18305 3' -57.8 NC_004681.1 + 18074 0.68 0.547535
Target:  5'- cAGCGggaGUgGCCgCAuGGGCUGCGgggCCCa -3'
miRNA:   3'- -UUGCa--CAgUGG-GUuCCCGGCGUa--GGG- -5'
18305 3' -57.8 NC_004681.1 + 70828 0.68 0.537178
Target:  5'- -cCGUGUCACggucuCCAcgcucAGcGGCCGCAgcaugCCCu -3'
miRNA:   3'- uuGCACAGUG-----GGU-----UC-CCGGCGUa----GGG- -5'
18305 3' -57.8 NC_004681.1 + 6267 0.68 0.526888
Target:  5'- --gGUGUCGCCaccccgaaCGAGGGCCGCGagaucaugggCCUg -3'
miRNA:   3'- uugCACAGUGG--------GUUCCCGGCGUa---------GGG- -5'
18305 3' -57.8 NC_004681.1 + 50258 0.69 0.486534
Target:  5'- aGGCGcUGUCcuggucccgcGCCCAccgcaagaAGGGCCaCGUCCCc -3'
miRNA:   3'- -UUGC-ACAG----------UGGGU--------UCCCGGcGUAGGG- -5'
18305 3' -57.8 NC_004681.1 + 63840 0.69 0.486534
Target:  5'- gGugGUGgcgUACCgAGGGcGCCGUAgcgCCCu -3'
miRNA:   3'- -UugCACa--GUGGgUUCC-CGGCGUa--GGG- -5'
18305 3' -57.8 NC_004681.1 + 49948 0.69 0.477654
Target:  5'- uGACGgaGUCGCCaagcgcggacccgagAAGGGCCGCAUCg- -3'
miRNA:   3'- -UUGCa-CAGUGGg--------------UUCCCGGCGUAGgg -5'
18305 3' -57.8 NC_004681.1 + 36768 0.7 0.428944
Target:  5'- cAGCGcGUCugCCA--GGCCGCuggCCCg -3'
miRNA:   3'- -UUGCaCAGugGGUucCCGGCGua-GGG- -5'
18305 3' -57.8 NC_004681.1 + 28217 0.7 0.410655
Target:  5'- ----cGUUGCCCGcGGGGCCGUcgcugGUCCCg -3'
miRNA:   3'- uugcaCAGUGGGU-UCCCGGCG-----UAGGG- -5'
18305 3' -57.8 NC_004681.1 + 46929 0.72 0.326869
Target:  5'- gGGCG-GUUGCCgcGGGGCUGCGUCUCg -3'
miRNA:   3'- -UUGCaCAGUGGguUCCCGGCGUAGGG- -5'
18305 3' -57.8 NC_004681.1 + 12976 0.72 0.304332
Target:  5'- -gUGUgGUCACCCGcAGcGGCCGUAgugCCCg -3'
miRNA:   3'- uuGCA-CAGUGGGU-UC-CCGGCGUa--GGG- -5'
18305 3' -57.8 NC_004681.1 + 60810 0.75 0.214899
Target:  5'- --gGUGUCACgC-GGGGUCGCAUCCUc -3'
miRNA:   3'- uugCACAGUGgGuUCCCGGCGUAGGG- -5'
18305 3' -57.8 NC_004681.1 + 6455 0.8 0.101968
Target:  5'- gGGCGUGgCGCCCAAGGGCUGCAgCgCg -3'
miRNA:   3'- -UUGCACaGUGGGUUCCCGGCGUaGgG- -5'
18305 3' -57.8 NC_004681.1 + 34720 1.08 0.000879
Target:  5'- gAACGUGUCACCCAAGGGCCGCAUCCCc -3'
miRNA:   3'- -UUGCACAGUGGGUUCCCGGCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.