miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18305 5' -58.4 NC_004681.1 + 26510 0.66 0.667789
Target:  5'- gGGAuGGGGCaGaACAUCGAGuCGCGCAg -3'
miRNA:   3'- -CCUcCUCCG-CaUGUGGCUCcGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 48312 0.66 0.657314
Target:  5'- gGGAGGAGaUGgacgAgGCCGAGGuCGC-CAu -3'
miRNA:   3'- -CCUCCUCcGCa---UgUGGCUCC-GCGuGU- -5'
18305 5' -58.4 NC_004681.1 + 69218 0.66 0.657314
Target:  5'- -aGGGAGGCcaggGCGCgggCGAGGCgGCGCu -3'
miRNA:   3'- ccUCCUCCGca--UGUG---GCUCCG-CGUGu -5'
18305 5' -58.4 NC_004681.1 + 2915 0.66 0.656266
Target:  5'- uGGGGGccuggcuGGGCGacgGCACCGccacGCGCGCc -3'
miRNA:   3'- -CCUCC-------UCCGCa--UGUGGCuc--CGCGUGu -5'
18305 5' -58.4 NC_004681.1 + 65897 0.66 0.646819
Target:  5'- cGGGGuGGGGCGgccgAgGCCGAGaCGgACGa -3'
miRNA:   3'- -CCUC-CUCCGCa---UgUGGCUCcGCgUGU- -5'
18305 5' -58.4 NC_004681.1 + 26324 0.66 0.636311
Target:  5'- -uAGGGGGCGggcaucgcCGCCGuGGCGgGCc -3'
miRNA:   3'- ccUCCUCCGCau------GUGGCuCCGCgUGu -5'
18305 5' -58.4 NC_004681.1 + 8610 0.66 0.624749
Target:  5'- --cGGGGGCGgucuCACCGuccgcgaAGGCGCcCAu -3'
miRNA:   3'- ccuCCUCCGCau--GUGGC-------UCCGCGuGU- -5'
18305 5' -58.4 NC_004681.1 + 58762 0.67 0.604802
Target:  5'- uGGAGacccccGAuGGUGUcacgcGCACCgucGAGGCGCGCGc -3'
miRNA:   3'- -CCUC------CU-CCGCA-----UGUGG---CUCCGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 39733 0.67 0.573483
Target:  5'- cGGGGGuGGCucuucauUGCACUGAGGaucaGCAUg -3'
miRNA:   3'- -CCUCCuCCGc------AUGUGGCUCCg---CGUGu -5'
18305 5' -58.4 NC_004681.1 + 59459 0.67 0.573483
Target:  5'- uGGGGAGGCGUcagcuacgaaGC-CCG-GGUGCAa- -3'
miRNA:   3'- cCUCCUCCGCA----------UGuGGCuCCGCGUgu -5'
18305 5' -58.4 NC_004681.1 + 29146 0.67 0.573483
Target:  5'- cGGAaaacGAGGUGUACucgccgACUGAGGCGCu-- -3'
miRNA:   3'- -CCUc---CUCCGCAUG------UGGCUCCGCGugu -5'
18305 5' -58.4 NC_004681.1 + 58000 0.67 0.552811
Target:  5'- gGGAGGAGGCGcucuaccaACGCCucaaGAGGCucaaGCAg -3'
miRNA:   3'- -CCUCCUCCGCa-------UGUGG----CUCCGcg--UGU- -5'
18305 5' -58.4 NC_004681.1 + 8239 0.68 0.542558
Target:  5'- aGGccGAGGuCGagGCGCaCGAGcGCGCGCAg -3'
miRNA:   3'- -CCucCUCC-GCa-UGUG-GCUC-CGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 7984 0.68 0.532368
Target:  5'- cGGAGGcGGCGgcggucuCAUCGAcgGGCGCGg- -3'
miRNA:   3'- -CCUCCuCCGCau-----GUGGCU--CCGCGUgu -5'
18305 5' -58.4 NC_004681.1 + 59604 0.68 0.532368
Target:  5'- aGGcGGAuGGCGU-CACCaGGGCGCuCGa -3'
miRNA:   3'- -CCuCCU-CCGCAuGUGGcUCCGCGuGU- -5'
18305 5' -58.4 NC_004681.1 + 5439 0.68 0.522248
Target:  5'- -cGGGAGGCGUgccaGCGCCuguGCGCGCu -3'
miRNA:   3'- ccUCCUCCGCA----UGUGGcucCGCGUGu -5'
18305 5' -58.4 NC_004681.1 + 63841 0.68 0.512203
Target:  5'- cGGuGGuGGCGU--ACCGAGG-GCGCc -3'
miRNA:   3'- -CCuCCuCCGCAugUGGCUCCgCGUGu -5'
18305 5' -58.4 NC_004681.1 + 27310 0.68 0.509205
Target:  5'- aGGAGGGGcGCG-ACGCCGGuGuacuucgcccgguaGCGCGCGc -3'
miRNA:   3'- -CCUCCUC-CGCaUGUGGCU-C--------------CGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 51525 0.68 0.502239
Target:  5'- cGAuGGuGGCGUACGUCGuGGCGUugAg -3'
miRNA:   3'- cCU-CCuCCGCAUGUGGCuCCGCGugU- -5'
18305 5' -58.4 NC_004681.1 + 7373 0.69 0.482572
Target:  5'- -cAGGcGGCGcacucgGCGCCGAGGUGgACGg -3'
miRNA:   3'- ccUCCuCCGCa-----UGUGGCUCCGCgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.