miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18305 5' -58.4 NC_004681.1 + 34685 1.1 0.000654
Target:  5'- uGGAGGAGGCGUACACCGAGGCGCACAa -3'
miRNA:   3'- -CCUCCUCCGCAUGUGGCUCCGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 49283 0.82 0.072361
Target:  5'- cGAGGAGcucUACACCGAGGCGCGCAa -3'
miRNA:   3'- cCUCCUCcgcAUGUGGCUCCGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 3232 0.77 0.158037
Target:  5'- uGGAGGAgGGCGa--GCCGcuGGGCGCGCGa -3'
miRNA:   3'- -CCUCCU-CCGCaugUGGC--UCCGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 49788 0.74 0.237934
Target:  5'- aGGGGGAGGUagAgGCCGcAGaGCGCGCAg -3'
miRNA:   3'- -CCUCCUCCGcaUgUGGC-UC-CGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 6397 0.73 0.281751
Target:  5'- gGGAGGAGGCcccgGCGCCGAagcgaccGGCcaGCACu -3'
miRNA:   3'- -CCUCCUCCGca--UGUGGCU-------CCG--CGUGu -5'
18305 5' -58.4 NC_004681.1 + 14453 0.73 0.289301
Target:  5'- aGGcGGAGGCGaACGCCGc-GCGCGCc -3'
miRNA:   3'- -CCuCCUCCGCaUGUGGCucCGCGUGu -5'
18305 5' -58.4 NC_004681.1 + 35579 0.72 0.309963
Target:  5'- cGGAGGAaggcgacGGCGUACACacc-GCGCACGu -3'
miRNA:   3'- -CCUCCU-------CCGCAUGUGgcucCGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 16087 0.72 0.310695
Target:  5'- --cGGuGGCGUcacCACCGcGGCGCGCAc -3'
miRNA:   3'- ccuCCuCCGCAu--GUGGCuCCGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 6567 0.71 0.381947
Target:  5'- uGGucGGGGauaGUcccgGCACCGAGGCGgGCGg -3'
miRNA:   3'- -CCucCUCCg--CA----UGUGGCUCCGCgUGU- -5'
18305 5' -58.4 NC_004681.1 + 33414 0.7 0.399192
Target:  5'- uGGAcGGcgaacgucccGGCGUACACCGcGGCGCGa- -3'
miRNA:   3'- -CCU-CCu---------CCGCAUGUGGCuCCGCGUgu -5'
18305 5' -58.4 NC_004681.1 + 67878 0.7 0.399192
Target:  5'- gGGuGGAGGC-UACgGCCGAGGCuagGCAUu -3'
miRNA:   3'- -CCuCCUCCGcAUG-UGGCUCCG---CGUGu -5'
18305 5' -58.4 NC_004681.1 + 9622 0.7 0.416927
Target:  5'- cGAGG-GGCgGUACaccagcagGCCGAGGCGCu-- -3'
miRNA:   3'- cCUCCuCCG-CAUG--------UGGCUCCGCGugu -5'
18305 5' -58.4 NC_004681.1 + 1001 0.7 0.425973
Target:  5'- aGGAuGGAGGCGgACGCCaGGGCGg--- -3'
miRNA:   3'- -CCU-CCUCCGCaUGUGGcUCCGCgugu -5'
18305 5' -58.4 NC_004681.1 + 41900 0.7 0.435135
Target:  5'- gGGAGGcGGCGUcuucCACUGcGGCGCGa- -3'
miRNA:   3'- -CCUCCuCCGCAu---GUGGCuCCGCGUgu -5'
18305 5' -58.4 NC_004681.1 + 61884 0.7 0.435135
Target:  5'- cGGuGGAGGCGUGCcucaACCaguuGGCGCugugGCAc -3'
miRNA:   3'- -CCuCCUCCGCAUG----UGGcu--CCGCG----UGU- -5'
18305 5' -58.4 NC_004681.1 + 17963 0.69 0.444409
Target:  5'- uGGAGGuccuccAGaGUGaACGCCGGGGCGCcCGg -3'
miRNA:   3'- -CCUCC------UC-CGCaUGUGGCUCCGCGuGU- -5'
18305 5' -58.4 NC_004681.1 + 7373 0.69 0.482572
Target:  5'- -cAGGcGGCGcacucgGCGCCGAGGUGgACGg -3'
miRNA:   3'- ccUCCuCCGCa-----UGUGGCUCCGCgUGU- -5'
18305 5' -58.4 NC_004681.1 + 51525 0.68 0.502239
Target:  5'- cGAuGGuGGCGUACGUCGuGGCGUugAg -3'
miRNA:   3'- cCU-CCuCCGCAUGUGGCuCCGCGugU- -5'
18305 5' -58.4 NC_004681.1 + 27310 0.68 0.509205
Target:  5'- aGGAGGGGcGCG-ACGCCGGuGuacuucgcccgguaGCGCGCGc -3'
miRNA:   3'- -CCUCCUC-CGCaUGUGGCU-C--------------CGCGUGU- -5'
18305 5' -58.4 NC_004681.1 + 63841 0.68 0.512203
Target:  5'- cGGuGGuGGCGU--ACCGAGG-GCGCc -3'
miRNA:   3'- -CCuCCuCCGCAugUGGCUCCgCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.