Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18306 | 5' | -48.7 | NC_004681.1 | + | 74210 | 0.67 | 0.966358 |
Target: 5'- -cAACGUGUuuGACAGCCucaugcgucgGGCGGa -3' miRNA: 3'- caUUGUACAugCUGUCGGua--------CCGUUg -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 58755 | 0.67 | 0.966358 |
Target: 5'- uGUGGCccGcgGCGcagGCGGCCGUGGCGc- -3' miRNA: 3'- -CAUUGuaCa-UGC---UGUCGGUACCGUug -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 71207 | 0.68 | 0.949959 |
Target: 5'- -gGACAcuUGcAUGACGGuCCAUGGuCAACu -3' miRNA: 3'- caUUGU--ACaUGCUGUC-GGUACC-GUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 16198 | 0.68 | 0.934644 |
Target: 5'- cGUGGCGgcUGUGCGcGCcGCgGUGGUGACg -3' miRNA: 3'- -CAUUGU--ACAUGC-UGuCGgUACCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 44683 | 0.68 | 0.934644 |
Target: 5'- ------aGUGCGGCGGCCGcgagcgcGGCGGCg -3' miRNA: 3'- cauuguaCAUGCUGUCGGUa------CCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 49903 | 0.71 | 0.837994 |
Target: 5'- -cGGguUGUuuuCGAucCAGCCGUGGCAGCc -3' miRNA: 3'- caUUguACAu--GCU--GUCGGUACCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 30898 | 0.73 | 0.76864 |
Target: 5'- cGUGGCGUaggaGUuguCGACAGUCAUGGCGc- -3' miRNA: 3'- -CAUUGUA----CAu--GCUGUCGGUACCGUug -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 30176 | 0.73 | 0.73639 |
Target: 5'- --cACAUGUGCGGCugAGCC-UGcGCGACa -3' miRNA: 3'- cauUGUACAUGCUG--UCGGuAC-CGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 35077 | 1.09 | 0.005554 |
Target: 5'- gGUAACAUGUACGACAGCCAUGGCAACc -3' miRNA: 3'- -CAUUGUACAUGCUGUCGGUACCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 29740 | 0.66 | 0.980997 |
Target: 5'- uUAGCGUGuUGCcauCGGUCGUGGuCGACg -3' miRNA: 3'- cAUUGUAC-AUGcu-GUCGGUACC-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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