miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18306 5' -48.7 NC_004681.1 + 35077 1.09 0.005554
Target:  5'- gGUAACAUGUACGACAGCCAUGGCAACc -3'
miRNA:   3'- -CAUUGUACAUGCUGUCGGUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 18377 0.79 0.437502
Target:  5'- -cGACAUGgcaggccagGCGGCGGCCGcGGCGGCa -3'
miRNA:   3'- caUUGUACa--------UGCUGUCGGUaCCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 1059 0.74 0.701996
Target:  5'- -gAGgAUGUACGGCccgauggAGCCcUGGCAGCg -3'
miRNA:   3'- caUUgUACAUGCUG-------UCGGuACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 25232 0.74 0.703119
Target:  5'- -cAACA---ACGGCGGCCAUGGCGcccGCg -3'
miRNA:   3'- caUUGUacaUGCUGUCGGUACCGU---UG- -5'
18306 5' -48.7 NC_004681.1 + 30176 0.73 0.73639
Target:  5'- --cACAUGUGCGGCugAGCC-UGcGCGACa -3'
miRNA:   3'- cauUGUACAUGCUG--UCGGuAC-CGUUG- -5'
18306 5' -48.7 NC_004681.1 + 30898 0.73 0.76864
Target:  5'- cGUGGCGUaggaGUuguCGACAGUCAUGGCGc- -3'
miRNA:   3'- -CAUUGUA----CAu--GCUGUCGGUACCGUug -5'
18306 5' -48.7 NC_004681.1 + 16529 0.72 0.779103
Target:  5'- gGUGGCGgcaacgGUccccACGGCGGCCGUGGUAuGCa -3'
miRNA:   3'- -CAUUGUa-----CA----UGCUGUCGGUACCGU-UG- -5'
18306 5' -48.7 NC_004681.1 + 15797 0.72 0.809453
Target:  5'- -gGGCAUGgcUGACGGCCuccGCAACg -3'
miRNA:   3'- caUUGUACauGCUGUCGGuacCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 49903 0.71 0.837994
Target:  5'- -cGGguUGUuuuCGAucCAGCCGUGGCAGCc -3'
miRNA:   3'- caUUguACAu--GCU--GUCGGUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 27755 0.7 0.88076
Target:  5'- gGUGACGc--GCGGCAGCgGcGGCAGCg -3'
miRNA:   3'- -CAUUGUacaUGCUGUCGgUaCCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 16709 0.69 0.916651
Target:  5'- ---cCggGUAUGACgGGCgGUGGCAGCg -3'
miRNA:   3'- cauuGuaCAUGCUG-UCGgUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 62072 0.69 0.928946
Target:  5'- aUGAC-UGUGCG-CGG-CAUGGCGGCc -3'
miRNA:   3'- cAUUGuACAUGCuGUCgGUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 16198 0.68 0.934644
Target:  5'- cGUGGCGgcUGUGCGcGCcGCgGUGGUGACg -3'
miRNA:   3'- -CAUUGU--ACAUGC-UGuCGgUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 44683 0.68 0.934644
Target:  5'- ------aGUGCGGCGGCCGcgagcgcGGCGGCg -3'
miRNA:   3'- cauuguaCAUGCUGUCGGUa------CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 71207 0.68 0.949959
Target:  5'- -gGACAcuUGcAUGACGGuCCAUGGuCAACu -3'
miRNA:   3'- caUUGU--ACaUGCUGUC-GGUACC-GUUG- -5'
18306 5' -48.7 NC_004681.1 + 28111 0.68 0.954479
Target:  5'- -cAACGggaccaGCGACGGCCccgcgGGCAACg -3'
miRNA:   3'- caUUGUaca---UGCUGUCGGua---CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 58755 0.67 0.966358
Target:  5'- uGUGGCccGcgGCGcagGCGGCCGUGGCGc- -3'
miRNA:   3'- -CAUUGuaCa-UGC---UGUCGGUACCGUug -5'
18306 5' -48.7 NC_004681.1 + 74210 0.67 0.966358
Target:  5'- -cAACGUGUuuGACAGCCucaugcgucgGGCGGa -3'
miRNA:   3'- caUUGUACAugCUGUCGGua--------CCGUUg -5'
18306 5' -48.7 NC_004681.1 + 45497 0.67 0.968442
Target:  5'- -cAACGaGUACGACGGCgAccccuacuacaagGGCGACg -3'
miRNA:   3'- caUUGUaCAUGCUGUCGgUa------------CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 5303 0.67 0.969779
Target:  5'- --uGCAucUGUgGCGACagcucGGCCAUGGCGGg -3'
miRNA:   3'- cauUGU--ACA-UGCUG-----UCGGUACCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.