Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18306 | 5' | -48.7 | NC_004681.1 | + | 27755 | 0.7 | 0.88076 |
Target: 5'- gGUGACGc--GCGGCAGCgGcGGCAGCg -3' miRNA: 3'- -CAUUGUacaUGCUGUCGgUaCCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 49903 | 0.71 | 0.837994 |
Target: 5'- -cGGguUGUuuuCGAucCAGCCGUGGCAGCc -3' miRNA: 3'- caUUguACAu--GCU--GUCGGUACCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 15797 | 0.72 | 0.809453 |
Target: 5'- -gGGCAUGgcUGACGGCCuccGCAACg -3' miRNA: 3'- caUUGUACauGCUGUCGGuacCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 16529 | 0.72 | 0.779103 |
Target: 5'- gGUGGCGgcaacgGUccccACGGCGGCCGUGGUAuGCa -3' miRNA: 3'- -CAUUGUa-----CA----UGCUGUCGGUACCGU-UG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 30898 | 0.73 | 0.76864 |
Target: 5'- cGUGGCGUaggaGUuguCGACAGUCAUGGCGc- -3' miRNA: 3'- -CAUUGUA----CAu--GCUGUCGGUACCGUug -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 30176 | 0.73 | 0.73639 |
Target: 5'- --cACAUGUGCGGCugAGCC-UGcGCGACa -3' miRNA: 3'- cauUGUACAUGCUG--UCGGuAC-CGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 25232 | 0.74 | 0.703119 |
Target: 5'- -cAACA---ACGGCGGCCAUGGCGcccGCg -3' miRNA: 3'- caUUGUacaUGCUGUCGGUACCGU---UG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 1059 | 0.74 | 0.701996 |
Target: 5'- -gAGgAUGUACGGCccgauggAGCCcUGGCAGCg -3' miRNA: 3'- caUUgUACAUGCUG-------UCGGuACCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 18377 | 0.79 | 0.437502 |
Target: 5'- -cGACAUGgcaggccagGCGGCGGCCGcGGCGGCa -3' miRNA: 3'- caUUGUACa--------UGCUGUCGGUaCCGUUG- -5' |
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18306 | 5' | -48.7 | NC_004681.1 | + | 35077 | 1.09 | 0.005554 |
Target: 5'- gGUAACAUGUACGACAGCCAUGGCAACc -3' miRNA: 3'- -CAUUGUACAUGCUGUCGGUACCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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