Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18307 | 3' | -60.3 | NC_004681.1 | + | 63445 | 0.66 | 0.45588 |
Target: 5'- -gGC-UUCCAGccUCGGCCGGAucaagaacccaaaGGGGAAg -3' miRNA: 3'- caCGuAGGGUC--AGUCGGCCU-------------CCCCUU- -5' |
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18307 | 3' | -60.3 | NC_004681.1 | + | 24727 | 0.67 | 0.447325 |
Target: 5'- -gGCAUCgCAGUCGacaCCGGcaacGGGGGAGa -3' miRNA: 3'- caCGUAGgGUCAGUc--GGCC----UCCCCUU- -5' |
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18307 | 3' | -60.3 | NC_004681.1 | + | 60164 | 0.67 | 0.410421 |
Target: 5'- -cGCGUCCUcgauggccacGGUCAGCCGGugccagguGcGGGAGc -3' miRNA: 3'- caCGUAGGG----------UCAGUCGGCCu-------C-CCCUU- -5' |
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18307 | 3' | -60.3 | NC_004681.1 | + | 57718 | 0.67 | 0.401495 |
Target: 5'- -aGUAgCCCAGUCGG-CGGAGGGa-- -3' miRNA: 3'- caCGUaGGGUCAGUCgGCCUCCCcuu -5' |
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18307 | 3' | -60.3 | NC_004681.1 | + | 7218 | 0.69 | 0.319318 |
Target: 5'- -cGCAUCCCGGU----UGGAGGGGAu -3' miRNA: 3'- caCGUAGGGUCAgucgGCCUCCCCUu -5' |
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18307 | 3' | -60.3 | NC_004681.1 | + | 35971 | 1.06 | 0.000654 |
Target: 5'- cGUGCAUCCCAGUCAGCCGGAGGGGAAg -3' miRNA: 3'- -CACGUAGGGUCAGUCGGCCUCCCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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