miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18307 5' -57.4 NC_004681.1 + 27897 0.66 0.710156
Target:  5'- cGCCGCCgCGCCCAUCUccagaagUGAGCa -3'
miRNA:   3'- cUGGCGG-GUGGGUAGGccaa---GCUUGa -5'
18307 5' -57.4 NC_004681.1 + 23681 0.66 0.698747
Target:  5'- uACgCGCCCGCCUccgcggacauagaGUggcCCGGaUUCGAGCUg -3'
miRNA:   3'- cUG-GCGGGUGGG-------------UA---GGCC-AAGCUUGA- -5'
18307 5' -57.4 NC_004681.1 + 8524 0.66 0.686218
Target:  5'- aGACCGCCCccgcGgCCAUCggccagaaccccuuCGGUUCGAc-- -3'
miRNA:   3'- -CUGGCGGG----UgGGUAG--------------GCCAAGCUuga -5'
18307 5' -57.4 NC_004681.1 + 39994 0.66 0.685171
Target:  5'- uGGCCGCgcgcugggggucuCCGCCCGcCUGGUcgaggaagcgcugcUCGAACUu -3'
miRNA:   3'- -CUGGCG-------------GGUGGGUaGGCCA--------------AGCUUGA- -5'
18307 5' -57.4 NC_004681.1 + 12182 0.66 0.668355
Target:  5'- --gCGUCUACCCGgacCCGGcgUCGGGCUu -3'
miRNA:   3'- cugGCGGGUGGGUa--GGCCa-AGCUUGA- -5'
18307 5' -57.4 NC_004681.1 + 30239 0.67 0.657801
Target:  5'- aGAUCGCCCGCCaCAgcggcggcggCCGGUacggcgUCGAGa- -3'
miRNA:   3'- -CUGGCGGGUGG-GUa---------GGCCA------AGCUUga -5'
18307 5' -57.4 NC_004681.1 + 16802 0.67 0.657801
Target:  5'- cACCGCCCgucauACCCGggaacaggCCGGUgcUCGGAg- -3'
miRNA:   3'- cUGGCGGG-----UGGGUa-------GGCCA--AGCUUga -5'
18307 5' -57.4 NC_004681.1 + 50464 0.67 0.647226
Target:  5'- aGCCGCCCucgaccacguCCCAcagCCGGUugUCGAccaGCUc -3'
miRNA:   3'- cUGGCGGGu---------GGGUa--GGCCA--AGCU---UGA- -5'
18307 5' -57.4 NC_004681.1 + 2459 0.67 0.626045
Target:  5'- -uCCGCCCACUC-UUCGGccgcgUCGAAUa -3'
miRNA:   3'- cuGGCGGGUGGGuAGGCCa----AGCUUGa -5'
18307 5' -57.4 NC_004681.1 + 1888 0.67 0.604885
Target:  5'- --aCGCUCACCCGgcuUCCGGcaugCGGGCa -3'
miRNA:   3'- cugGCGGGUGGGU---AGGCCaa--GCUUGa -5'
18307 5' -57.4 NC_004681.1 + 25074 0.68 0.58381
Target:  5'- uGCCGCCagaGCCCccgucgCCGGgggUGAACUg -3'
miRNA:   3'- cUGGCGGg--UGGGua----GGCCaa-GCUUGA- -5'
18307 5' -57.4 NC_004681.1 + 3972 0.68 0.562885
Target:  5'- cGCgCGCaCCugaGCCCAUaCCGGUUCGGAg- -3'
miRNA:   3'- cUG-GCG-GG---UGGGUA-GGCCAAGCUUga -5'
18307 5' -57.4 NC_004681.1 + 20133 0.68 0.552496
Target:  5'- aGCgCGgCCACCCGUCCuggucuccgcGGUUCGAcaGCg -3'
miRNA:   3'- cUG-GCgGGUGGGUAGG----------CCAAGCU--UGa -5'
18307 5' -57.4 NC_004681.1 + 62796 0.7 0.481749
Target:  5'- -cCCGUCCGCCuCAUCCGGcgCcGACg -3'
miRNA:   3'- cuGGCGGGUGG-GUAGGCCaaGcUUGa -5'
18307 5' -57.4 NC_004681.1 + 49396 0.71 0.38051
Target:  5'- aGACCGCCCGCCUugcgcgccUCGGUguaGAGCUc -3'
miRNA:   3'- -CUGGCGGGUGGGua------GGCCAag-CUUGA- -5'
18307 5' -57.4 NC_004681.1 + 46094 0.73 0.29451
Target:  5'- gGACCGCCCACCgAUCauugaaGUUCGggUg -3'
miRNA:   3'- -CUGGCGGGUGGgUAGgc----CAAGCuuGa -5'
18307 5' -57.4 NC_004681.1 + 35937 1.07 0.001346
Target:  5'- cGACCGCCCACCCAUCCGGUUCGAACUc -3'
miRNA:   3'- -CUGGCGGGUGGGUAGGCCAAGCUUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.