miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18308 3' -53 NC_004681.1 + 28758 0.66 0.899126
Target:  5'- -gGUGCGuuGAGACCGAccGugGGu-- -3'
miRNA:   3'- gaCACGCggCUUUGGCUu-CugCUcuu -5'
18308 3' -53 NC_004681.1 + 40233 0.66 0.899126
Target:  5'- --uUGCGCgGGAGCCauAGACGAGc- -3'
miRNA:   3'- gacACGCGgCUUUGGcuUCUGCUCuu -5'
18308 3' -53 NC_004681.1 + 16191 0.66 0.898433
Target:  5'- gCUGUGCGCgccgcgguggugaCGccACCGAGGGCGGc-- -3'
miRNA:   3'- -GACACGCG-------------GCuuUGGCUUCUGCUcuu -5'
18308 3' -53 NC_004681.1 + 69271 0.66 0.898433
Target:  5'- cCUGaUGgGCCGAucugaugGACCGcguGGACGAGc- -3'
miRNA:   3'- -GAC-ACgCGGCU-------UUGGCu--UCUGCUCuu -5'
18308 3' -53 NC_004681.1 + 65242 0.66 0.884747
Target:  5'- ---aGCGCgGAcACCGGAGACGcGGu -3'
miRNA:   3'- gacaCGCGgCUuUGGCUUCUGCuCUu -5'
18308 3' -53 NC_004681.1 + 60131 0.66 0.877167
Target:  5'- ---gGUGCgGGAgccGCCGAAGGCGAGc- -3'
miRNA:   3'- gacaCGCGgCUU---UGGCUUCUGCUCuu -5'
18308 3' -53 NC_004681.1 + 57803 0.66 0.861254
Target:  5'- ---cGCGCCGcgccGCCGAGGugGcGAAg -3'
miRNA:   3'- gacaCGCGGCuu--UGGCUUCugCuCUU- -5'
18308 3' -53 NC_004681.1 + 69449 0.67 0.852935
Target:  5'- ---aGCGUCGAuACUGggGACGAu-- -3'
miRNA:   3'- gacaCGCGGCUuUGGCuuCUGCUcuu -5'
18308 3' -53 NC_004681.1 + 74443 0.67 0.844384
Target:  5'- ---aGCGCUGAGAgUGAGGACuGAGGc -3'
miRNA:   3'- gacaCGCGGCUUUgGCUUCUG-CUCUu -5'
18308 3' -53 NC_004681.1 + 730 0.67 0.817431
Target:  5'- ---gGCGUCGAucaccgGGCCGAAGGCGcGGAGg -3'
miRNA:   3'- gacaCGCGGCU------UUGGCUUCUGC-UCUU- -5'
18308 3' -53 NC_004681.1 + 65490 0.67 0.817431
Target:  5'- gUGUGCGCgGgcACCGGAu-CGGGAu -3'
miRNA:   3'- gACACGCGgCuuUGGCUUcuGCUCUu -5'
18308 3' -53 NC_004681.1 + 9075 0.68 0.778819
Target:  5'- gUG-GCGCCGAcAgCGAGGAggcCGAGGAg -3'
miRNA:   3'- gACaCGCGGCUuUgGCUUCU---GCUCUU- -5'
18308 3' -53 NC_004681.1 + 34159 0.68 0.767745
Target:  5'- aUGUGC-CCGAcaaAGCCGAAGGCcccgccuGAGAc -3'
miRNA:   3'- gACACGcGGCU---UUGGCUUCUG-------CUCUu -5'
18308 3' -53 NC_004681.1 + 22950 0.69 0.737778
Target:  5'- gUGgugGCGCUGucGAACgCGggGAUGAGGAu -3'
miRNA:   3'- gACa--CGCGGC--UUUG-GCuuCUGCUCUU- -5'
18308 3' -53 NC_004681.1 + 39477 0.69 0.727223
Target:  5'- -gGUGCGCUGGcucaaGGCCGGuggcagcgAGGCGGGAc -3'
miRNA:   3'- gaCACGCGGCU-----UUGGCU--------UCUGCUCUu -5'
18308 3' -53 NC_004681.1 + 66955 0.69 0.727223
Target:  5'- ---cGCGCCGAGcUCGAAGGCGAc-- -3'
miRNA:   3'- gacaCGCGGCUUuGGCUUCUGCUcuu -5'
18308 3' -53 NC_004681.1 + 20369 0.69 0.715504
Target:  5'- -cGUGCcaaucccGCCGAAGCCGgAAGACGGc-- -3'
miRNA:   3'- gaCACG-------CGGCUUUGGC-UUCUGCUcuu -5'
18308 3' -53 NC_004681.1 + 65893 0.7 0.70584
Target:  5'- gUGggGCgGCCGAGGCCGAgacGGACGAa-- -3'
miRNA:   3'- gACa-CG-CGGCUUUGGCU---UCUGCUcuu -5'
18308 3' -53 NC_004681.1 + 18204 0.7 0.70584
Target:  5'- cCUGgccggggGCGCCGAuGCCGggGAUGccGAu -3'
miRNA:   3'- -GACa------CGCGGCUuUGGCuuCUGCu-CUu -5'
18308 3' -53 NC_004681.1 + 46559 0.7 0.695035
Target:  5'- -aGUGgGCCGAcuccACgGggGAUGAGGAu -3'
miRNA:   3'- gaCACgCGGCUu---UGgCuuCUGCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.