Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18308 | 3' | -53 | NC_004681.1 | + | 36246 | 1.06 | 0.003464 |
Target: 5'- gCUGUGCGCCGAAACCGAAGACGAGAAg -3' miRNA: 3'- -GACACGCGGCUUUGGCUUCUGCUCUU- -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 3750 | 0.72 | 0.585393 |
Target: 5'- uCUGgGCGgCGAcgUCGAAGGCGAGGg -3' miRNA: 3'- -GACaCGCgGCUuuGGCUUCUGCUCUu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 46559 | 0.7 | 0.695035 |
Target: 5'- -aGUGgGCCGAcuccACgGggGAUGAGGAu -3' miRNA: 3'- gaCACgCGGCUu---UGgCuuCUGCUCUU- -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 18204 | 0.7 | 0.70584 |
Target: 5'- cCUGgccggggGCGCCGAuGCCGggGAUGccGAu -3' miRNA: 3'- -GACa------CGCGGCUuUGGCuuCUGCu-CUu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 65893 | 0.7 | 0.70584 |
Target: 5'- gUGggGCgGCCGAGGCCGAgacGGACGAa-- -3' miRNA: 3'- gACa-CG-CGGCUUUGGCU---UCUGCUcuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 69240 | 0.7 | 0.673252 |
Target: 5'- -gGUGUaGCCG-AGCCGGuAGGCGAGGGa -3' miRNA: 3'- gaCACG-CGGCuUUGGCU-UCUGCUCUU- -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 22950 | 0.69 | 0.737778 |
Target: 5'- gUGgugGCGCUGucGAACgCGggGAUGAGGAu -3' miRNA: 3'- gACa--CGCGGC--UUUG-GCuuCUGCUCUU- -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 20369 | 0.69 | 0.715504 |
Target: 5'- -cGUGCcaaucccGCCGAAGCCGgAAGACGGc-- -3' miRNA: 3'- gaCACG-------CGGCUUUGGC-UUCUGCUcuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 39477 | 0.69 | 0.727223 |
Target: 5'- -gGUGCGCUGGcucaaGGCCGGuggcagcgAGGCGGGAc -3' miRNA: 3'- gaCACGCGGCU-----UUGGCU--------UCUGCUCUu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 66955 | 0.69 | 0.727223 |
Target: 5'- ---cGCGCCGAGcUCGAAGGCGAc-- -3' miRNA: 3'- gacaCGCGGCUUuGGCUUCUGCUcuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 34159 | 0.68 | 0.767745 |
Target: 5'- aUGUGC-CCGAcaaAGCCGAAGGCcccgccuGAGAc -3' miRNA: 3'- gACACGcGGCU---UUGGCUUCUG-------CUCUu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 9075 | 0.68 | 0.778819 |
Target: 5'- gUG-GCGCCGAcAgCGAGGAggcCGAGGAg -3' miRNA: 3'- gACaCGCGGCUuUgGCUUCU---GCUCUU- -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 69449 | 0.67 | 0.852935 |
Target: 5'- ---aGCGUCGAuACUGggGACGAu-- -3' miRNA: 3'- gacaCGCGGCUuUGGCuuCUGCUcuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 74443 | 0.67 | 0.844384 |
Target: 5'- ---aGCGCUGAGAgUGAGGACuGAGGc -3' miRNA: 3'- gacaCGCGGCUUUgGCUUCUG-CUCUu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 65490 | 0.67 | 0.817431 |
Target: 5'- gUGUGCGCgGgcACCGGAu-CGGGAu -3' miRNA: 3'- gACACGCGgCuuUGGCUUcuGCUCUu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 730 | 0.67 | 0.817431 |
Target: 5'- ---gGCGUCGAucaccgGGCCGAAGGCGcGGAGg -3' miRNA: 3'- gacaCGCGGCU------UUGGCUUCUGC-UCUU- -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 60131 | 0.66 | 0.877167 |
Target: 5'- ---gGUGCgGGAgccGCCGAAGGCGAGc- -3' miRNA: 3'- gacaCGCGgCUU---UGGCUUCUGCUCuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 69271 | 0.66 | 0.898433 |
Target: 5'- cCUGaUGgGCCGAucugaugGACCGcguGGACGAGc- -3' miRNA: 3'- -GAC-ACgCGGCU-------UUGGCu--UCUGCUCuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 28758 | 0.66 | 0.899126 |
Target: 5'- -gGUGCGuuGAGACCGAccGugGGu-- -3' miRNA: 3'- gaCACGCggCUUUGGCUu-CugCUcuu -5' |
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18308 | 3' | -53 | NC_004681.1 | + | 40233 | 0.66 | 0.899126 |
Target: 5'- --uUGCGCgGGAGCCauAGACGAGc- -3' miRNA: 3'- gacACGCGgCUUUGGcuUCUGCUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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