miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18308 5' -57.8 NC_004681.1 + 39401 0.66 0.663951
Target:  5'- cGCgCGCGCAgguauuugUCGAUGGuGGcCGCGc -3'
miRNA:   3'- aCGgGCGCGUa-------AGCUACCcUC-GUGCa -5'
18308 5' -57.8 NC_004681.1 + 30842 0.66 0.632036
Target:  5'- aGCCCGCGgAcUCGAU--GAGCAUGc -3'
miRNA:   3'- aCGGGCGCgUaAGCUAccCUCGUGCa -5'
18308 5' -57.8 NC_004681.1 + 22716 0.66 0.632036
Target:  5'- cUGCCCGCGgugUCcGUGGagaaggagguGGGCACGUa -3'
miRNA:   3'- -ACGGGCGCguaAGcUACC----------CUCGUGCA- -5'
18308 5' -57.8 NC_004681.1 + 67109 0.66 0.621385
Target:  5'- aGCuuGCGCAUggccugCGAcaUGaGGcGCGCGUg -3'
miRNA:   3'- aCGggCGCGUAa-----GCU--AC-CCuCGUGCA- -5'
18308 5' -57.8 NC_004681.1 + 25250 0.66 0.621385
Target:  5'- cGCCCGCGgcggCGGUuGGGuGCGCu- -3'
miRNA:   3'- aCGGGCGCguaaGCUA-CCCuCGUGca -5'
18308 5' -57.8 NC_004681.1 + 26236 0.67 0.587404
Target:  5'- aUGCCCGCccccuacgCGGUGGG-GCAUGa -3'
miRNA:   3'- -ACGGGCGcguaa---GCUACCCuCGUGCa -5'
18308 5' -57.8 NC_004681.1 + 3068 0.68 0.544421
Target:  5'- aGuCCUGCGCAa--GAUGGGAguccucggcgccaaGCACGUc -3'
miRNA:   3'- aC-GGGCGCGUaagCUACCCU--------------CGUGCA- -5'
18308 5' -57.8 NC_004681.1 + 72234 0.68 0.526888
Target:  5'- cGUCCGCGCGgcggUUGAUGGacuccacgauGGCGCGg -3'
miRNA:   3'- aCGGGCGCGUa---AGCUACCc---------UCGUGCa -5'
18308 5' -57.8 NC_004681.1 + 61360 0.69 0.476672
Target:  5'- gGCCCGuCGCug-CGGUGGGcaacAGCucGCGUg -3'
miRNA:   3'- aCGGGC-GCGuaaGCUACCC----UCG--UGCA- -5'
18308 5' -57.8 NC_004681.1 + 60168 0.69 0.466911
Target:  5'- aGCCCGCGUccUCGAUGGc--CACGg -3'
miRNA:   3'- aCGGGCGCGuaAGCUACCcucGUGCa -5'
18308 5' -57.8 NC_004681.1 + 51904 0.69 0.457253
Target:  5'- cGgCCGCaGCAUggaGAacuccacgUGGGAGCGCGUc -3'
miRNA:   3'- aCgGGCG-CGUAag-CU--------ACCCUCGUGCA- -5'
18308 5' -57.8 NC_004681.1 + 24553 0.7 0.438267
Target:  5'- gUGCCCGUGgGUggcUCGcacUGGGuGCGCGg -3'
miRNA:   3'- -ACGGGCGCgUA---AGCu--ACCCuCGUGCa -5'
18308 5' -57.8 NC_004681.1 + 39194 0.7 0.401694
Target:  5'- uUGCCCGCGCAggUGGccaccaGGGcuuGCACGg -3'
miRNA:   3'- -ACGGGCGCGUaaGCUa-----CCCu--CGUGCa -5'
18308 5' -57.8 NC_004681.1 + 46360 0.7 0.401694
Target:  5'- gGUCCGCGUAgucaUUGAcgGGGGGUugGUa -3'
miRNA:   3'- aCGGGCGCGUa---AGCUa-CCCUCGugCA- -5'
18308 5' -57.8 NC_004681.1 + 36205 1.07 0.001174
Target:  5'- uUGCCCGCGCAUUCGAUGGGAGCACGUu -3'
miRNA:   3'- -ACGGGCGCGUAAGCUACCCUCGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.