miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18309 5' -48.3 NC_004681.1 + 24752 0.66 0.993603
Target:  5'- uCGGGCgGGUUGU---CGggGUCCGCg -3'
miRNA:   3'- cGCUUGgCUAAUAaguGCuuCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 17736 0.66 0.992549
Target:  5'- aGCGGGCCGGUaguagugcgacgUGaaCGCGggGUcguCCGCg -3'
miRNA:   3'- -CGCUUGGCUA------------AUaaGUGCuuCG---GGUG- -5'
18309 5' -48.3 NC_004681.1 + 48221 0.66 0.99136
Target:  5'- cGCGGGCCaucugcUUCuCGAuGCCCACc -3'
miRNA:   3'- -CGCUUGGcuaau-AAGuGCUuCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 3385 0.66 0.99136
Target:  5'- aGCGGAaguCUGAgaagUUGgcCGCGgcGCCCGCg -3'
miRNA:   3'- -CGCUU---GGCU----AAUaaGUGCuuCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 45115 0.66 0.988539
Target:  5'- -gGGGCCGAcgccgUCGCGcAGGUCUACa -3'
miRNA:   3'- cgCUUGGCUaaua-AGUGC-UUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 38893 0.66 0.988539
Target:  5'- gGCGGACUug-----CGCGcGGCCCGCa -3'
miRNA:   3'- -CGCUUGGcuaauaaGUGCuUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 44270 0.66 0.988221
Target:  5'- gGUGAuuggggcGCCGuagcacucgUAUUCGCGGccggugagggccaGGCCCGCg -3'
miRNA:   3'- -CGCU-------UGGCua-------AUAAGUGCU-------------UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 63923 0.67 0.983026
Target:  5'- uUGAACCGGggacgaACcAAGCCCGCa -3'
miRNA:   3'- cGCUUGGCUaauaagUGcUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 13699 0.67 0.983026
Target:  5'- cGCGAGCUGGacgucAUUgGCGuggccGCCCGCg -3'
miRNA:   3'- -CGCUUGGCUaa---UAAgUGCuu---CGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 33534 0.67 0.982813
Target:  5'- gGUGAuccacucGCCGG----UCAUGAGGCCCGa -3'
miRNA:   3'- -CGCU-------UGGCUaauaAGUGCUUCGGGUg -5'
18309 5' -48.3 NC_004681.1 + 59771 0.67 0.982161
Target:  5'- gGCGGcgcuGCCauguuggCugGAAGCCCACc -3'
miRNA:   3'- -CGCU----UGGcuaauaaGugCUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 48696 0.67 0.980803
Target:  5'- aUGGGCCGA--GUUCGgcuuCGAGucGCCCGCg -3'
miRNA:   3'- cGCUUGGCUaaUAAGU----GCUU--CGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 5767 0.68 0.975714
Target:  5'- aGCGGAUCGGcacgaccucgUcgUCgGCGAAGCUCACc -3'
miRNA:   3'- -CGCUUGGCUa---------AuaAG-UGCUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 18 0.68 0.975714
Target:  5'- uGUGAGCCGugauguuUUCACGAAuauguGcCCCACc -3'
miRNA:   3'- -CGCUUGGCuaau---AAGUGCUU-----C-GGGUG- -5'
18309 5' -48.3 NC_004681.1 + 60196 0.68 0.975436
Target:  5'- aGCcAGgCGAUggagUCACGAaucucgaAGCCCGCg -3'
miRNA:   3'- -CGcUUgGCUAaua-AGUGCU-------UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 18073 0.68 0.969704
Target:  5'- aGCGGgagugGCCGcAUgggcuGCGggGCCCACc -3'
miRNA:   3'- -CGCU-----UGGC-UAauaagUGCuuCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 72657 0.69 0.95464
Target:  5'- cCGAACCGuaaccguUUCcCGGAGCCUGCc -3'
miRNA:   3'- cGCUUGGCuaau---AAGuGCUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 34826 0.69 0.95464
Target:  5'- gGCGGcgGCCGAagcg-CGCGGgaauucccaAGCCCGCa -3'
miRNA:   3'- -CGCU--UGGCUaauaaGUGCU---------UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 9512 0.69 0.950199
Target:  5'- gGCGAgcggucuggaugACCGAagg--CGCGAaguGGCCCACc -3'
miRNA:   3'- -CGCU------------UGGCUaauaaGUGCU---UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 62452 0.69 0.945477
Target:  5'- uGCGAuCCGAUc---CACGAAGCCguaACg -3'
miRNA:   3'- -CGCUuGGCUAauaaGUGCUUCGGg--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.