miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18309 5' -48.3 NC_004681.1 + 36443 1.12 0.005242
Target:  5'- gGCGAACCGAUUAUUCACGAAGCCCACc -3'
miRNA:   3'- -CGCUUGGCUAAUAAGUGCUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 41841 0.79 0.497675
Target:  5'- aGCGGGCCGAUcuc-CGCGGAGCCgACc -3'
miRNA:   3'- -CGCUUGGCUAauaaGUGCUUCGGgUG- -5'
18309 5' -48.3 NC_004681.1 + 22822 0.74 0.751852
Target:  5'- gGCGGccguGCCGG-UGUUCugGGucuguGCCCACa -3'
miRNA:   3'- -CGCU----UGGCUaAUAAGugCUu----CGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 47001 0.73 0.803019
Target:  5'- aGCGAACCaGUcc--CGCGAGGCCCGa -3'
miRNA:   3'- -CGCUUGGcUAauaaGUGCUUCGGGUg -5'
18309 5' -48.3 NC_004681.1 + 64805 0.73 0.808872
Target:  5'- gGCGGACCcaccagcgUCAUGggGCCUGCg -3'
miRNA:   3'- -CGCUUGGcuaaua--AGUGCuuCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 31275 0.73 0.812736
Target:  5'- aGCGGAUUGAUUGc-CGCGAAucuGCCCGCc -3'
miRNA:   3'- -CGCUUGGCUAAUaaGUGCUU---CGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 75422 0.71 0.882455
Target:  5'- cGCGcGGCCGuac--UCGCGGcgcAGCCCACg -3'
miRNA:   3'- -CGC-UUGGCuaauaAGUGCU---UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 8642 0.71 0.89734
Target:  5'- cGCGGACCuGAUUuccUCGCGGcccgucaccAGCCCGa -3'
miRNA:   3'- -CGCUUGG-CUAAua-AGUGCU---------UCGGGUg -5'
18309 5' -48.3 NC_004681.1 + 39933 0.71 0.904365
Target:  5'- cGCGGGCgCGGUgcg-CGCGGugcGGUCCACg -3'
miRNA:   3'- -CGCUUG-GCUAauaaGUGCU---UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 32086 0.7 0.917558
Target:  5'- aGCGAGCCGAUgc-UgGCGAugaucuGGUUCACg -3'
miRNA:   3'- -CGCUUGGCUAauaAgUGCU------UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 64450 0.7 0.923721
Target:  5'- -gGGACCGAUa---CAUGAAGuCCCACc -3'
miRNA:   3'- cgCUUGGCUAauaaGUGCUUC-GGGUG- -5'
18309 5' -48.3 NC_004681.1 + 5541 0.7 0.935178
Target:  5'- gGCGAACgGAUcaaggUAUUCACaGggGUCgGCc -3'
miRNA:   3'- -CGCUUGgCUA-----AUAAGUG-CuuCGGgUG- -5'
18309 5' -48.3 NC_004681.1 + 16977 0.69 0.938388
Target:  5'- gGCuGAGCUGcgccucaACGAGGCCCGCa -3'
miRNA:   3'- -CG-CUUGGCuaauaagUGCUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 62452 0.69 0.945477
Target:  5'- uGCGAuCCGAUc---CACGAAGCCguaACg -3'
miRNA:   3'- -CGCUuGGCUAauaaGUGCUUCGGg--UG- -5'
18309 5' -48.3 NC_004681.1 + 9512 0.69 0.950199
Target:  5'- gGCGAgcggucuggaugACCGAagg--CGCGAaguGGCCCACc -3'
miRNA:   3'- -CGCU------------UGGCUaauaaGUGCU---UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 34826 0.69 0.95464
Target:  5'- gGCGGcgGCCGAagcg-CGCGGgaauucccaAGCCCGCa -3'
miRNA:   3'- -CGCU--UGGCUaauaaGUGCU---------UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 72657 0.69 0.95464
Target:  5'- cCGAACCGuaaccguUUCcCGGAGCCUGCc -3'
miRNA:   3'- cGCUUGGCuaau---AAGuGCUUCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 18073 0.68 0.969704
Target:  5'- aGCGGgagugGCCGcAUgggcuGCGggGCCCACc -3'
miRNA:   3'- -CGCU-----UGGC-UAauaagUGCuuCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 60196 0.68 0.975436
Target:  5'- aGCcAGgCGAUggagUCACGAaucucgaAGCCCGCg -3'
miRNA:   3'- -CGcUUgGCUAaua-AGUGCU-------UCGGGUG- -5'
18309 5' -48.3 NC_004681.1 + 18 0.68 0.975714
Target:  5'- uGUGAGCCGugauguuUUCACGAAuauguGcCCCACc -3'
miRNA:   3'- -CGCUUGGCuaau---AAGUGCUU-----C-GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.