Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18310 | 5' | -54.8 | NC_004681.1 | + | 6408 | 0.66 | 0.833553 |
Target: 5'- cGGCCUUcGGGUCAUCCGAccGCGG-CAg -3' miRNA: 3'- cCUGGGGcUCUAGUAGGCU--CGCUaGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 69176 | 0.66 | 0.850487 |
Target: 5'- aGGAgCUgGAGAUCAUCUGGucuuGCGG-CAa -3' miRNA: 3'- -CCUgGGgCUCUAGUAGGCU----CGCUaGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 38798 | 0.66 | 0.823894 |
Target: 5'- cGGGCCgcgcgcaaguccgCCGAGAcCAUCCGGGCc---- -3' miRNA: 3'- -CCUGG-------------GGCUCUaGUAGGCUCGcuagu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 938 | 0.67 | 0.768473 |
Target: 5'- aGGuCCUCaagGGGAUCGUCCGGGaGGUCc -3' miRNA: 3'- -CCuGGGG---CUCUAGUAGGCUCgCUAGu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 24245 | 0.68 | 0.728153 |
Target: 5'- aGGCCCUuGGcggCGUCCGAcGCGAUCu -3' miRNA: 3'- cCUGGGGcUCua-GUAGGCU-CGCUAGu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 32353 | 0.68 | 0.748536 |
Target: 5'- uGGCCuuGAGuUCGUCCGGGCu---- -3' miRNA: 3'- cCUGGggCUCuAGUAGGCUCGcuagu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 35330 | 0.69 | 0.675795 |
Target: 5'- aGGcGCCCCGAGAag--UCGAGCGAcCAc -3' miRNA: 3'- -CC-UGGGGCUCUaguaGGCUCGCUaGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 50324 | 0.69 | 0.686385 |
Target: 5'- uGGGcacCCCCGAGGaaAUCCGAGagcuGGUCGa -3' miRNA: 3'- -CCU---GGGGCUCUagUAGGCUCg---CUAGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 45059 | 0.69 | 0.675795 |
Target: 5'- gGGACgCCGAag-CAUCCGccGCGGUCGa -3' miRNA: 3'- -CCUGgGGCUcuaGUAGGCu-CGCUAGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 3326 | 0.69 | 0.675795 |
Target: 5'- cGGACCCCGAu----UCCGGGUGAg-- -3' miRNA: 3'- -CCUGGGGCUcuaguAGGCUCGCUagu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 16743 | 0.7 | 0.59047 |
Target: 5'- aGACCCuCGAGggUGUCCGGGCuGAUg- -3' miRNA: 3'- cCUGGG-GCUCuaGUAGGCUCG-CUAgu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 3375 | 0.7 | 0.622453 |
Target: 5'- gGGACUCCuuGAGGguggccuucCAUCCGAGCGAg-- -3' miRNA: 3'- -CCUGGGG--CUCUa--------GUAGGCUCGCUagu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 6286 | 0.71 | 0.558782 |
Target: 5'- aGGGCCgCGAGAUCAUgggcCUGccGCGGUCGg -3' miRNA: 3'- -CCUGGgGCUCUAGUA----GGCu-CGCUAGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 2966 | 0.72 | 0.477171 |
Target: 5'- aGGACCCCGAGAU-AUUCGcGGCcAUCGa -3' miRNA: 3'- -CCUGGGGCUCUAgUAGGC-UCGcUAGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 24656 | 0.72 | 0.517335 |
Target: 5'- cGGACCCCGAcaaccCGcCCGAGCuGAUCGc -3' miRNA: 3'- -CCUGGGGCUcua--GUaGGCUCG-CUAGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 46855 | 0.72 | 0.527591 |
Target: 5'- cGGcACCCCGAuGAUCAaccgccuugUCCGGGUGGaguUCAc -3' miRNA: 3'- -CC-UGGGGCU-CUAGU---------AGGCUCGCU---AGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 6600 | 0.74 | 0.393025 |
Target: 5'- cGGucuuCCCCGAG-UCcgUgGAGCGAUCAg -3' miRNA: 3'- -CCu---GGGGCUCuAGuaGgCUCGCUAGU- -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 1976 | 0.74 | 0.401895 |
Target: 5'- uGGACgUCG-GGUUGUCCGGGCGAUUg -3' miRNA: 3'- -CCUGgGGCuCUAGUAGGCUCGCUAGu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 64766 | 0.75 | 0.366351 |
Target: 5'- aGGCCCagcuuggCGGGAUCGUCCGguauGGCGAUCu -3' miRNA: 3'- cCUGGG-------GCUCUAGUAGGC----UCGCUAGu -5' |
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18310 | 5' | -54.8 | NC_004681.1 | + | 36752 | 1.11 | 0.001329 |
Target: 5'- cGGACCCCGAGAUCAUCCGAGCGAUCAa -3' miRNA: 3'- -CCUGGGGCUCUAGUAGGCUCGCUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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