miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18311 3' -53.7 NC_004681.1 + 1943 0.66 0.899744
Target:  5'- uCUCGGCCUucguUGGAacCUUCAAcacguagauGGACGUCg -3'
miRNA:   3'- -GAGCUGGG----GCCU--GAAGUU---------CCUGUAGg -5'
18311 3' -53.7 NC_004681.1 + 40977 0.66 0.899744
Target:  5'- cCUUGACCUCGccgaGCUcCuuguGGACGUCCu -3'
miRNA:   3'- -GAGCUGGGGCc---UGAaGuu--CCUGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 51005 0.66 0.899744
Target:  5'- gUCGACgUCGGGgagcuCUUCcacAAGGGCGUCa -3'
miRNA:   3'- gAGCUGgGGCCU-----GAAG---UUCCUGUAGg -5'
18311 3' -53.7 NC_004681.1 + 9156 0.66 0.895651
Target:  5'- --aGAUCgCGGAgaacgucuucgacgcCUUCGuGGACAUCCa -3'
miRNA:   3'- gagCUGGgGCCU---------------GAAGUuCCUGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 30752 0.66 0.892873
Target:  5'- aUCGAgUCCgCGGGCUcCAAGGGCcugGUCa -3'
miRNA:   3'- gAGCU-GGG-GCCUGAaGUUCCUG---UAGg -5'
18311 3' -53.7 NC_004681.1 + 19991 0.66 0.878378
Target:  5'- -cCGugCCCGGugUagCGAuGGucuuCGUCCa -3'
miRNA:   3'- gaGCugGGGCCugAa-GUU-CCu---GUAGG- -5'
18311 3' -53.7 NC_004681.1 + 32043 0.67 0.862914
Target:  5'- -gUGAUCCUGGGCaagcagcgCAAGGaagGCGUCCu -3'
miRNA:   3'- gaGCUGGGGCCUGaa------GUUCC---UGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 49584 0.67 0.862914
Target:  5'- --gGACCCCGGcgACUgggCAguAGGGCuugCCg -3'
miRNA:   3'- gagCUGGGGCC--UGAa--GU--UCCUGua-GG- -5'
18311 3' -53.7 NC_004681.1 + 67496 0.67 0.854834
Target:  5'- -aCGGCCuuGGGCUUgcccUGAGcGACGUUCu -3'
miRNA:   3'- gaGCUGGggCCUGAA----GUUC-CUGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 29327 0.67 0.846531
Target:  5'- --aGGCCCCucGGAUUUCGAGGGg--CCu -3'
miRNA:   3'- gagCUGGGG--CCUGAAGUUCCUguaGG- -5'
18311 3' -53.7 NC_004681.1 + 19369 0.67 0.846531
Target:  5'- gUCGACCacaCCGGcCUgggCGacGGGuACAUCCa -3'
miRNA:   3'- gAGCUGG---GGCCuGAa--GU--UCC-UGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 10745 0.67 0.846531
Target:  5'- -gCGACCaCUGGGa--CAAGGGCAagcUCCa -3'
miRNA:   3'- gaGCUGG-GGCCUgaaGUUCCUGU---AGG- -5'
18311 3' -53.7 NC_004681.1 + 5007 0.67 0.843998
Target:  5'- -gUGAcCCCCGGGCaugacgugccccccUUCAcuGGCAUCCu -3'
miRNA:   3'- gaGCU-GGGGCCUG--------------AAGUucCUGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 54373 0.67 0.838013
Target:  5'- cCUCGccACCCagcugggugUGGAgUUCGAGGugGUCg -3'
miRNA:   3'- -GAGC--UGGG---------GCCUgAAGUUCCugUAGg -5'
18311 3' -53.7 NC_004681.1 + 8210 0.67 0.821267
Target:  5'- -gCGGCCCUGGGCUUCcaacugugccgugcuAGGcAUAUUCa -3'
miRNA:   3'- gaGCUGGGGCCUGAAGu--------------UCC-UGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 16019 0.67 0.820366
Target:  5'- aUCG-UCCCGGcuGCUggCAAGGGCG-CCg -3'
miRNA:   3'- gAGCuGGGGCC--UGAa-GUUCCUGUaGG- -5'
18311 3' -53.7 NC_004681.1 + 34059 0.67 0.820366
Target:  5'- cCUUGGCCgCGGACgggaccUCAGucACAUCCa -3'
miRNA:   3'- -GAGCUGGgGCCUGa-----AGUUccUGUAGG- -5'
18311 3' -53.7 NC_004681.1 + 45303 0.68 0.811254
Target:  5'- gUUGugUCCaaGGACggCAAGGACuacuUCCg -3'
miRNA:   3'- gAGCugGGG--CCUGaaGUUCCUGu---AGG- -5'
18311 3' -53.7 NC_004681.1 + 420 0.68 0.811254
Target:  5'- uCUUGGCCggUGGACgaCGAGGGCcUCCg -3'
miRNA:   3'- -GAGCUGGg-GCCUGaaGUUCCUGuAGG- -5'
18311 3' -53.7 NC_004681.1 + 59981 0.68 0.811254
Target:  5'- gUCGACgCUGGcguCUUCAguucggcgAGGAUGUCCc -3'
miRNA:   3'- gAGCUGgGGCCu--GAAGU--------UCCUGUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.