miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18311	5'	-56.5	NC_004681.1	+	43781	0.66	0.732743
	Target:  5'- cGGGGUGUguUgGAGggGuugaUCGGcGGGc -3' miRNA:   3'- uUCCCACAguAgCUCuuC----AGCC-CCCa -5'
18311	5'	-56.5	NC_004681.1	+	7897	0.66	0.732743
	Target:  5'- -cGGG-GagGUCG-GGAGUCuGGGGGUu -3' miRNA:   3'- uuCCCaCagUAGCuCUUCAG-CCCCCA- -5'
18311	5'	-56.5	NC_004681.1	+	51494	0.66	0.701418
	Target:  5'- gGAGGGcacGUUcugcugcauGUCGAGGAGcUGGGGGg -3' miRNA:   3'- -UUCCCa--CAG---------UAGCUCUUCaGCCCCCa -5'
18311	5'	-56.5	NC_004681.1	+	54700	0.66	0.690834
	Target:  5'- cAGGGUGcCGUCGAuguccacgauGAuugCGGGGGg -3' miRNA:   3'- uUCCCACaGUAGCU----------CUucaGCCCCCa -5'
18311	5'	-56.5	NC_004681.1	+	34496	0.69	0.541365
	Target:  5'- cAAGGGUG-CAgaguuugaUCGGGAucGUCuGGGGGUg -3' miRNA:   3'- -UUCCCACaGU--------AGCUCUu-CAG-CCCCCA- -5'
18311	5'	-56.5	NC_004681.1	+	30976	0.71	0.431686
	Target:  5'- cAGGGUGUCG-CGGGGcuccagcgGGUCGGcGGGc -3' miRNA:   3'- uUCCCACAGUaGCUCU--------UCAGCC-CCCa -5'
18311	5'	-56.5	NC_004681.1	+	37621	1.05	0.001884
	Target:  5'- cAAGGGUGUCAUCGAGAAGUCGGGGGUg -3' miRNA:   3'- -UUCCCACAGUAGCUCUUCAGCCCCCA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home