miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18312 3' -55.6 NC_004681.1 + 13221 0.66 0.77443
Target:  5'- aAGGGCGgUG-GCGGGCagcgggGCGGGUGu -3'
miRNA:   3'- cUCUCGCgAUaCGCCUGaa----CGCUCGC- -5'
18312 3' -55.6 NC_004681.1 + 34702 0.66 0.76446
Target:  5'- --cGGCGCcuucgGUGCGGGCUUGgGAauucccGCGc -3'
miRNA:   3'- cucUCGCGa----UACGCCUGAACgCU------CGC- -5'
18312 3' -55.6 NC_004681.1 + 39940 0.66 0.744135
Target:  5'- --uGGCGCgc-GCGGGCgcggUGCGcGCGg -3'
miRNA:   3'- cucUCGCGauaCGCCUGa---ACGCuCGC- -5'
18312 3' -55.6 NC_004681.1 + 49047 0.66 0.744135
Target:  5'- cGGGAGCGCUuggcUGCccGGuucuuCUUGCG-GCGc -3'
miRNA:   3'- -CUCUCGCGAu---ACG--CCu----GAACGCuCGC- -5'
18312 3' -55.6 NC_004681.1 + 60600 0.66 0.733801
Target:  5'- cGAGGcCGCcgcUGCGGcACUUGaCGAGCa -3'
miRNA:   3'- -CUCUcGCGau-ACGCC-UGAAC-GCUCGc -5'
18312 3' -55.6 NC_004681.1 + 11045 0.67 0.691589
Target:  5'- --cAGCGUguggGUGCGGGagUGCGGGUGg -3'
miRNA:   3'- cucUCGCGa---UACGCCUgaACGCUCGC- -5'
18312 3' -55.6 NC_004681.1 + 20303 0.67 0.670106
Target:  5'- cGAGAGCuguuGCUcUGUGGGCUgauUGGGCGa -3'
miRNA:   3'- -CUCUCG----CGAuACGCCUGAac-GCUCGC- -5'
18312 3' -55.6 NC_004681.1 + 38903 0.68 0.659307
Target:  5'- gGAuGGU-CUcgGCGGACUUGCGcGCGg -3'
miRNA:   3'- -CUcUCGcGAuaCGCCUGAACGCuCGC- -5'
18312 3' -55.6 NC_004681.1 + 56274 0.68 0.637646
Target:  5'- aGGAGCGCgc--UGGACUUGUGGccGCGg -3'
miRNA:   3'- cUCUCGCGauacGCCUGAACGCU--CGC- -5'
18312 3' -55.6 NC_004681.1 + 42427 0.7 0.540954
Target:  5'- uGGAGCGCUGcgcGUGGGCggggaugGUGAGCu -3'
miRNA:   3'- cUCUCGCGAUa--CGCCUGaa-----CGCUCGc -5'
18312 3' -55.6 NC_004681.1 + 53847 0.72 0.430504
Target:  5'- uGGAGgGCcAUGCGGACUgGgGGGUGg -3'
miRNA:   3'- cUCUCgCGaUACGCCUGAaCgCUCGC- -5'
18312 3' -55.6 NC_004681.1 + 38183 1.08 0.001377
Target:  5'- aGAGAGCGCUAUGCGGACUUGCGAGCGu -3'
miRNA:   3'- -CUCUCGCGAUACGCCUGAACGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.