miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18312 5' -64.1 NC_004681.1 + 18058 0.66 0.366376
Target:  5'- aUgGGCUgCGGGGCCcaccGGAgccGCCCUCg -3'
miRNA:   3'- cAgUCGGgGCUCCGG----CCUac-CGGGAG- -5'
18312 5' -64.1 NC_004681.1 + 5842 0.66 0.366376
Target:  5'- cUCAGCCCCGAGGCUcagcaGCgCCUg -3'
miRNA:   3'- cAGUCGGGGCUCCGGccuacCG-GGAg -5'
18312 5' -64.1 NC_004681.1 + 23578 0.66 0.350502
Target:  5'- cGUCAGCCaCGAgGGCUacgagggcacggGGGUGGCCaUCc -3'
miRNA:   3'- -CAGUCGGgGCU-CCGG------------CCUACCGGgAG- -5'
18312 5' -64.1 NC_004681.1 + 68105 0.66 0.349722
Target:  5'- --gAGgCCCGaAGGCguucucuuccuugCGGAUGGCCCa- -3'
miRNA:   3'- cagUCgGGGC-UCCG-------------GCCUACCGGGag -5'
18312 5' -64.1 NC_004681.1 + 33111 0.67 0.320245
Target:  5'- -cCAuGUCCCGAGGUCGGcaGGCCgCUa -3'
miRNA:   3'- caGU-CGGGGCUCCGGCCuaCCGG-GAg -5'
18312 5' -64.1 NC_004681.1 + 861 0.67 0.305866
Target:  5'- -cCA-CCCCGucaugggcggcaGGGCCGGGUaGGCCgUCa -3'
miRNA:   3'- caGUcGGGGC------------UCCGGCCUA-CCGGgAG- -5'
18312 5' -64.1 NC_004681.1 + 35381 0.67 0.298864
Target:  5'- cGUCcaAGCCaCCGGuGGCCGGAU--UCCUCg -3'
miRNA:   3'- -CAG--UCGG-GGCU-CCGGCCUAccGGGAG- -5'
18312 5' -64.1 NC_004681.1 + 7577 0.69 0.229943
Target:  5'- -aCGGCCgggGAGGCCGuGAUGGCaCCUa -3'
miRNA:   3'- caGUCGGgg-CUCCGGC-CUACCG-GGAg -5'
18312 5' -64.1 NC_004681.1 + 50389 0.69 0.229943
Target:  5'- cGUCGGCCgCGGGGaCG--UGGCCCUUc -3'
miRNA:   3'- -CAGUCGGgGCUCCgGCcuACCGGGAG- -5'
18312 5' -64.1 NC_004681.1 + 7362 0.7 0.178052
Target:  5'- cUCGGCgCCGAGGUggacggccgcgucgUGGAUGGCCUg- -3'
miRNA:   3'- cAGUCGgGGCUCCG--------------GCCUACCGGGag -5'
18312 5' -64.1 NC_004681.1 + 30145 0.72 0.142602
Target:  5'- --gAGCUCCGAGGCCG-AUGGCCg-- -3'
miRNA:   3'- cagUCGGGGCUCCGGCcUACCGGgag -5'
18312 5' -64.1 NC_004681.1 + 7423 0.74 0.101282
Target:  5'- gGUCAGCCCCGGGuGCCGGGgguggaacgucgcUGGCgugcagCUCg -3'
miRNA:   3'- -CAGUCGGGGCUC-CGGCCU-------------ACCGg-----GAG- -5'
18312 5' -64.1 NC_004681.1 + 44127 0.82 0.026221
Target:  5'- cUCAcCCCCGAGGCCGcGGgccUGGCCCUCa -3'
miRNA:   3'- cAGUcGGGGCUCCGGC-CU---ACCGGGAG- -5'
18312 5' -64.1 NC_004681.1 + 38146 1.09 0.000208
Target:  5'- aGUCAGCCCCGAGGCCGGAUGGCCCUCg -3'
miRNA:   3'- -CAGUCGGGGCUCCGGCCUACCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.