miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18313 3' -56.9 NC_004681.1 + 30664 0.66 0.710112
Target:  5'- ----cGCggaCGCCGCGGUCaAGCuCGCc -3'
miRNA:   3'- cuugaCGaa-GUGGCGCCAG-UCG-GCGu -5'
18313 3' -56.9 NC_004681.1 + 17816 0.66 0.710112
Target:  5'- -uGCUGCUUgACCGCGG-CcGUCGa- -3'
miRNA:   3'- cuUGACGAAgUGGCGCCaGuCGGCgu -5'
18313 3' -56.9 NC_004681.1 + 48709 0.66 0.710112
Target:  5'- ----gGCUUCGagucgcCCGCGGUCaacgAGCUGCGc -3'
miRNA:   3'- cuugaCGAAGU------GGCGCCAG----UCGGCGU- -5'
18313 3' -56.9 NC_004681.1 + 3148 0.66 0.700629
Target:  5'- aGGACUGCcaccaggcccuuggCGCCGCGGgugcgggCAuuGCCGCu -3'
miRNA:   3'- -CUUGACGaa------------GUGGCGCCa------GU--CGGCGu -5'
18313 3' -56.9 NC_004681.1 + 28625 0.66 0.699572
Target:  5'- uGAACUGgUUUGCCGUGGagAuGaCCGCGg -3'
miRNA:   3'- -CUUGACgAAGUGGCGCCagU-C-GGCGU- -5'
18313 3' -56.9 NC_004681.1 + 12899 0.66 0.699572
Target:  5'- -uGCUGCagCugCGuCGGUC-GCCGUg -3'
miRNA:   3'- cuUGACGaaGugGC-GCCAGuCGGCGu -5'
18313 3' -56.9 NC_004681.1 + 25864 0.66 0.68897
Target:  5'- aAAgUGCaUguCCGgGGUCAGCgGCAc -3'
miRNA:   3'- cUUgACGaAguGGCgCCAGUCGgCGU- -5'
18313 3' -56.9 NC_004681.1 + 38320 0.66 0.687907
Target:  5'- ----gGCgcCGCCGCGGgacgucuUCGGCCGCc -3'
miRNA:   3'- cuugaCGaaGUGGCGCC-------AGUCGGCGu -5'
18313 3' -56.9 NC_004681.1 + 66550 0.66 0.678316
Target:  5'- uGAGCUuCUgcaCGCCGCGGg-AGUCGCGg -3'
miRNA:   3'- -CUUGAcGAa--GUGGCGCCagUCGGCGU- -5'
18313 3' -56.9 NC_004681.1 + 68732 0.66 0.678316
Target:  5'- ----cGCUggCACCGCGGugugUCAGUgGCAc -3'
miRNA:   3'- cuugaCGAa-GUGGCGCC----AGUCGgCGU- -5'
18313 3' -56.9 NC_004681.1 + 61653 0.66 0.671902
Target:  5'- aAGCUGCgcgcagaagccgcCGCCGCGGa-GGCCGCc -3'
miRNA:   3'- cUUGACGaa-----------GUGGCGCCagUCGGCGu -5'
18313 3' -56.9 NC_004681.1 + 53616 0.66 0.667619
Target:  5'- uGAGCUugacgcccGCgaugUCACCGCGGUCAuggguGCCa-- -3'
miRNA:   3'- -CUUGA--------CGa---AGUGGCGCCAGU-----CGGcgu -5'
18313 3' -56.9 NC_004681.1 + 26797 0.66 0.667619
Target:  5'- --uCUGUcaacUUCACCGCGG-CGGCCa-- -3'
miRNA:   3'- cuuGACG----AAGUGGCGCCaGUCGGcgu -5'
18313 3' -56.9 NC_004681.1 + 70470 0.66 0.666547
Target:  5'- --cCUGCg--GCCGCGcguagacGUCAGCCGUAu -3'
miRNA:   3'- cuuGACGaagUGGCGC-------CAGUCGGCGU- -5'
18313 3' -56.9 NC_004681.1 + 33279 0.66 0.656891
Target:  5'- -cGCUGCcgggugUCAUCGacgcCGGUCGcGCCGCGg -3'
miRNA:   3'- cuUGACGa-----AGUGGC----GCCAGU-CGGCGU- -5'
18313 3' -56.9 NC_004681.1 + 15456 0.66 0.656891
Target:  5'- cGAAC-GCcUUACCcucgGCGGUUAGCUGCu -3'
miRNA:   3'- -CUUGaCGaAGUGG----CGCCAGUCGGCGu -5'
18313 3' -56.9 NC_004681.1 + 16026 0.67 0.64614
Target:  5'- cGGCUGCUggcaagggcgcCGCCGCuGUCAccgcauccGCCGCAa -3'
miRNA:   3'- cUUGACGAa----------GUGGCGcCAGU--------CGGCGU- -5'
18313 3' -56.9 NC_004681.1 + 66078 0.67 0.624613
Target:  5'- ----aGCUUCugCGCGG-CAGCCu-- -3'
miRNA:   3'- cuugaCGAAGugGCGCCaGUCGGcgu -5'
18313 3' -56.9 NC_004681.1 + 45059 0.67 0.624613
Target:  5'- gGGACgccgaaGCaucCGCCGCGGUCGaggcccucGCCGCGg -3'
miRNA:   3'- -CUUGa-----CGaa-GUGGCGCCAGU--------CGGCGU- -5'
18313 3' -56.9 NC_004681.1 + 61095 0.67 0.613854
Target:  5'- cGAGCUGCgguUCACCcaagGUGGgcaGGCCGUc -3'
miRNA:   3'- -CUUGACGa--AGUGG----CGCCag-UCGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.