miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18313 5' -54.6 NC_004681.1 + 62600 0.66 0.818951
Target:  5'- -gUGCccauGGCcugGGCCAUgaucaGGAGUUcguaGACCa -3'
miRNA:   3'- caACGu---CCGa--CCGGUA-----CCUCAA----CUGG- -5'
18313 5' -54.6 NC_004681.1 + 62766 0.66 0.818951
Target:  5'- --cGaCAGGCUGaCCGccGAGUUGGCUa -3'
miRNA:   3'- caaC-GUCCGACcGGUacCUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 8950 0.66 0.780655
Target:  5'- --aGCAGGC-GGCCcUGGAcgaaGUUGAa- -3'
miRNA:   3'- caaCGUCCGaCCGGuACCU----CAACUgg -5'
18313 5' -54.6 NC_004681.1 + 40091 0.66 0.780655
Target:  5'- --aGCGGcGCUGGUucaaggccgagCcgGuGAGUUGACCc -3'
miRNA:   3'- caaCGUC-CGACCG-----------GuaC-CUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 74268 0.67 0.770673
Target:  5'- cGUUGC--GCUGGCCAccu-GUUGGCCc -3'
miRNA:   3'- -CAACGucCGACCGGUaccuCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 42241 0.67 0.760549
Target:  5'- cGUUGgccucuauCAGGCUGG-CGUGGAccagGUUGGCa -3'
miRNA:   3'- -CAAC--------GUCCGACCgGUACCU----CAACUGg -5'
18313 5' -54.6 NC_004681.1 + 38985 0.67 0.760549
Target:  5'- --aGCAGGCUGGCCuucuccAGUggcGCCa -3'
miRNA:   3'- caaCGUCCGACCGGuacc--UCAac-UGG- -5'
18313 5' -54.6 NC_004681.1 + 49550 0.67 0.750296
Target:  5'- cUUGUAGcGggGGCCGUGGAagcacUGGCCg -3'
miRNA:   3'- cAACGUC-CgaCCGGUACCUca---ACUGG- -5'
18313 5' -54.6 NC_004681.1 + 41736 0.67 0.739923
Target:  5'- --aGUAGGCguUGGCCAggaacuUGGAGgugGGCg -3'
miRNA:   3'- caaCGUCCG--ACCGGU------ACCUCaa-CUGg -5'
18313 5' -54.6 NC_004681.1 + 16616 0.67 0.729442
Target:  5'- -cUGCAGGCc-GCgAUGGAGgcGGCg -3'
miRNA:   3'- caACGUCCGacCGgUACCUCaaCUGg -5'
18313 5' -54.6 NC_004681.1 + 66864 0.67 0.718866
Target:  5'- -cUGCGaGCaGGCCcUGGAgaucGUUGACCu -3'
miRNA:   3'- caACGUcCGaCCGGuACCU----CAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 23466 0.68 0.697468
Target:  5'- -gUGgAGGCgGGCa--GGAgGUUGACCa -3'
miRNA:   3'- caACgUCCGaCCGguaCCU-CAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 2024 0.68 0.697468
Target:  5'- --gGcCAGG-UGGUCGUGGAGggcGGCCg -3'
miRNA:   3'- caaC-GUCCgACCGGUACCUCaa-CUGG- -5'
18313 5' -54.6 NC_004681.1 + 58743 0.69 0.621162
Target:  5'- --cGCAGGC-GGCCGUGGcGcagGACa -3'
miRNA:   3'- caaCGUCCGaCCGGUACCuCaa-CUGg -5'
18313 5' -54.6 NC_004681.1 + 45523 0.69 0.621162
Target:  5'- ----aGGGC-GGCCAUGGAGgcGGCg -3'
miRNA:   3'- caacgUCCGaCCGGUACCUCaaCUGg -5'
18313 5' -54.6 NC_004681.1 + 45576 0.7 0.588402
Target:  5'- cGUUGauCAGGgUGGCCAgcucGGAGUgGACg -3'
miRNA:   3'- -CAAC--GUCCgACCGGUa---CCUCAaCUGg -5'
18313 5' -54.6 NC_004681.1 + 30160 0.7 0.577543
Target:  5'- --gGCGGcGC-GGCCGcGGAGUgGACCu -3'
miRNA:   3'- caaCGUC-CGaCCGGUaCCUCAaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 16500 0.7 0.555967
Target:  5'- --cGCAuGGcCUGGUCAcccuUGGAGgUGGCCg -3'
miRNA:   3'- caaCGU-CC-GACCGGU----ACCUCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 6360 0.71 0.534631
Target:  5'- cGUU-CGGGgUGGCgAcaccGGAGUUGACCa -3'
miRNA:   3'- -CAAcGUCCgACCGgUa---CCUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 21343 0.72 0.462604
Target:  5'- ---aCAGGCUGGCCGUGaGAuGcaGACCg -3'
miRNA:   3'- caacGUCCGACCGGUAC-CU-CaaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.