miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18313 5' -54.6 NC_004681.1 + 39017 0.98 0.009287
Target:  5'- gGUUGCAGGCU-GCCAUGGAGUUGACCc -3'
miRNA:   3'- -CAACGUCCGAcCGGUACCUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 33462 0.78 0.19154
Target:  5'- cGUUGCGGGCcagUGGCCGUGGcugauccuGG-UGGCCg -3'
miRNA:   3'- -CAACGUCCG---ACCGGUACC--------UCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 28637 0.77 0.251582
Target:  5'- -cUGCGGGCUugaugaacugguuuGCCGUGGAGaUGACCg -3'
miRNA:   3'- caACGUCCGAc-------------CGGUACCUCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 40001 0.75 0.297225
Target:  5'- --cGCAGGCUGGCCGcgcgcUGGGGgucuCCg -3'
miRNA:   3'- caaCGUCCGACCGGU-----ACCUCaacuGG- -5'
18313 5' -54.6 NC_004681.1 + 29410 0.72 0.433318
Target:  5'- cGUUGaggAGGUUGGUgcgaGUGGAGUUGACg -3'
miRNA:   3'- -CAACg--UCCGACCGg---UACCUCAACUGg -5'
18313 5' -54.6 NC_004681.1 + 68417 0.72 0.442961
Target:  5'- --cGCAGGCUGGCguuCGUGGAauacaaGUgaacGACCg -3'
miRNA:   3'- caaCGUCCGACCG---GUACCU------CAa---CUGG- -5'
18313 5' -54.6 NC_004681.1 + 2496 0.72 0.452725
Target:  5'- cUUGCGGGUguacUGGCCuuUGGuGUgGACCa -3'
miRNA:   3'- cAACGUCCG----ACCGGu-ACCuCAaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 21343 0.72 0.462604
Target:  5'- ---aCAGGCUGGCCGUGaGAuGcaGACCg -3'
miRNA:   3'- caacGUCCGACCGGUAC-CU-CaaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 6360 0.71 0.534631
Target:  5'- cGUU-CGGGgUGGCgAcaccGGAGUUGACCa -3'
miRNA:   3'- -CAAcGUCCgACCGgUa---CCUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 16500 0.7 0.555967
Target:  5'- --cGCAuGGcCUGGUCAcccuUGGAGgUGGCCg -3'
miRNA:   3'- caaCGU-CC-GACCGGU----ACCUCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 30160 0.7 0.577543
Target:  5'- --gGCGGcGC-GGCCGcGGAGUgGACCu -3'
miRNA:   3'- caaCGUC-CGaCCGGUaCCUCAaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 45576 0.7 0.588402
Target:  5'- cGUUGauCAGGgUGGCCAgcucGGAGUgGACg -3'
miRNA:   3'- -CAAC--GUCCgACCGGUa---CCUCAaCUGg -5'
18313 5' -54.6 NC_004681.1 + 58743 0.69 0.621162
Target:  5'- --cGCAGGC-GGCCGUGGcGcagGACa -3'
miRNA:   3'- caaCGUCCGaCCGGUACCuCaa-CUGg -5'
18313 5' -54.6 NC_004681.1 + 45523 0.69 0.621162
Target:  5'- ----aGGGC-GGCCAUGGAGgcGGCg -3'
miRNA:   3'- caacgUCCGaCCGGUACCUCaaCUGg -5'
18313 5' -54.6 NC_004681.1 + 2024 0.68 0.697468
Target:  5'- --gGcCAGG-UGGUCGUGGAGggcGGCCg -3'
miRNA:   3'- caaC-GUCCgACCGGUACCUCaa-CUGG- -5'
18313 5' -54.6 NC_004681.1 + 23466 0.68 0.697468
Target:  5'- -gUGgAGGCgGGCa--GGAgGUUGACCa -3'
miRNA:   3'- caACgUCCGaCCGguaCCU-CAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 66864 0.67 0.718866
Target:  5'- -cUGCGaGCaGGCCcUGGAgaucGUUGACCu -3'
miRNA:   3'- caACGUcCGaCCGGuACCU----CAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 16616 0.67 0.729442
Target:  5'- -cUGCAGGCc-GCgAUGGAGgcGGCg -3'
miRNA:   3'- caACGUCCGacCGgUACCUCaaCUGg -5'
18313 5' -54.6 NC_004681.1 + 41736 0.67 0.739923
Target:  5'- --aGUAGGCguUGGCCAggaacuUGGAGgugGGCg -3'
miRNA:   3'- caaCGUCCG--ACCGGU------ACCUCaa-CUGg -5'
18313 5' -54.6 NC_004681.1 + 49550 0.67 0.750296
Target:  5'- cUUGUAGcGggGGCCGUGGAagcacUGGCCg -3'
miRNA:   3'- cAACGUC-CgaCCGGUACCUca---ACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.