miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18313 5' -54.6 NC_004681.1 + 38985 0.67 0.760549
Target:  5'- --aGCAGGCUGGCCuucuccAGUggcGCCa -3'
miRNA:   3'- caaCGUCCGACCGGuacc--UCAac-UGG- -5'
18313 5' -54.6 NC_004681.1 + 42241 0.67 0.760549
Target:  5'- cGUUGgccucuauCAGGCUGG-CGUGGAccagGUUGGCa -3'
miRNA:   3'- -CAAC--------GUCCGACCgGUACCU----CAACUGg -5'
18313 5' -54.6 NC_004681.1 + 74268 0.67 0.770673
Target:  5'- cGUUGC--GCUGGCCAccu-GUUGGCCc -3'
miRNA:   3'- -CAACGucCGACCGGUaccuCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 8950 0.66 0.780655
Target:  5'- --aGCAGGC-GGCCcUGGAcgaaGUUGAa- -3'
miRNA:   3'- caaCGUCCGaCCGGuACCU----CAACUgg -5'
18313 5' -54.6 NC_004681.1 + 40091 0.66 0.780655
Target:  5'- --aGCGGcGCUGGUucaaggccgagCcgGuGAGUUGACCc -3'
miRNA:   3'- caaCGUC-CGACCG-----------GuaC-CUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 62766 0.66 0.818951
Target:  5'- --cGaCAGGCUGaCCGccGAGUUGGCUa -3'
miRNA:   3'- caaC-GUCCGACcGGUacCUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 62600 0.66 0.818951
Target:  5'- -gUGCccauGGCcugGGCCAUgaucaGGAGUUcguaGACCa -3'
miRNA:   3'- caACGu---CCGa--CCGGUA-----CCUCAA----CUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.